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    C8h11orf52 similar to human chromosome 11 open reading frame 52 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689959, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C8h11orf52provided by RGD
    Official Full Name
    similar to human chromosome 11 open reading frame 52provided by RGD
    Primary source
    RGD:1586341
    See related
    EnsemblRapid:ENSRNOG00000051792 AllianceGenome:RGD:1586341
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C11orf52 (chromosome 11 open reading frame 52). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 89.5), Liver (RPKM 88.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C8h11orf52 in Genome Data Viewer
    Location:
    8q23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (59977717..59984706, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (51081342..51088333, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (55164736..55174613, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene dihydrolipoamide S-acetyltransferase Neighboring gene DIX domain containing 1 Neighboring gene uncharacterized LOC120094337 Neighboring gene high mobility group nucleosomal binding domain 2, pseudogene 2 Neighboring gene heat shock protein family B (small) member 2 Neighboring gene crystallin, alpha B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
    2. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Principe S, et al. Proteomics, 2013 May. PMID 23533145, Free PMC Article
    3. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C11orf52 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109559.1 → NP_001103029.1  uncharacterized protein C11orf52 homolog

      See identical proteins and their annotated locations for NP_001103029.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473975
      UniProtKB/TrEMBL
      A0A8I6AFQ5, A6J4F2
      Conserved Domains (1) summary
      pfam15147
      Location:1 → 126
      DUF4578; Domain of unknown function (DUF4578)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      59977717..59984706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039082164.2 → XP_038938092.1  uncharacterized protein C11orf52 homolog isoform X2

      Conserved Domains (1) summary
      pfam15147
      Location:37 → 118
      DUF4578; Domain of unknown function (DUF4578)

    2. XM_063266160.1 → XP_063122230.1  uncharacterized protein C11orf52 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I6AFQ5
      Related
      ENSRNOP00000091820.2, ENSRNOT00000101377.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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