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    Iqcf3 IQ motif containing F3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501050, updated on 9-Dec-2024

    Summary

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    Symbol
    Iqcf3provided by RGD
    Full Name
    IQ motif containing F3provided by RGD
    Primary source
    RGD:1565277
    See related
    EnsemblRapid:ENSRNOG00000022445 AllianceGenome:RGD:1565277
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human IQCF2 (IQ motif containing F2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 1549.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Iqcf3 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (116043899..116076767, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (107163067..107198028, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (115228567..115263522, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing F1 Neighboring gene IQ motif containing F5 Neighboring gene IQ domain-containing protein F5-like Neighboring gene uncharacterized LOC134480098

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    IQ domain-containing protein F3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025153.1 → NP_001020324.1  IQ domain-containing protein F3

      See identical proteins and their annotated locations for NP_001020324.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079282
      UniProtKB/Swiss-Prot
      Q6AXX0
      UniProtKB/TrEMBL
      A0A0G2K7C8
      Related
      ENSRNOP00000029311.4, ENSRNOT00000039696.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      116043899..116076767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063266002.1 → XP_063122072.1  IQ domain-containing protein F3 isoform X3

    2. XM_017595848.3 → XP_017451337.1  IQ domain-containing protein F3 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K7C8
      Related
      ENSRNOP00000101926.1, ENSRNOT00000167119.1

    3. XM_063266003.1 → XP_063122073.1  IQ domain-containing protein F3 isoform X4

    4. XM_006243837.4 → XP_006243899.1  IQ domain-containing protein F3 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K7C8

    5. XM_063266004.1 → XP_063122074.1  IQ domain-containing protein F3 isoform X5

      UniProtKB/TrEMBL
      A0A8I6A261
      Related
      ENSRNOP00000085751.1, ENSRNOT00000094387.2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AXX0.1 GenPept UniProtKB/Swiss-Prot:Q6AXX0

    Gene LinkOut

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