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    Cdpf1 cysteine rich, DPF motif domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362975, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cdpf1provided by RGD
    Official Full Name
    cysteine rich, DPF motif domain containing 1provided by RGD
    Primary source
    RGD:1306001
    See related
    EnsemblRapid:ENSRNOG00000032846 AllianceGenome:RGD:1306001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306001
    Summary
    Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 60.5), Muscle (RPKM 40.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cdpf1 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (118773497..118785283, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (116896672..116905438, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (126687404..126692783, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene microRNA let7c-2 Neighboring gene microRNA let-7b Neighboring gene peroxisome proliferator activated receptor alpha Neighboring gene polycystin family receptor for egg jelly Neighboring gene tetratricopeptide repeat domain 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    cysteine-rich DPF motif domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401168.1 → NP_001388097.1  cysteine-rich DPF motif domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007

    2. NM_001401169.1 → NP_001388098.1  cysteine-rich DPF motif domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      Related
      ENSRNOP00000052760.3, ENSRNOT00000055909.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      118773497..118785283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063263943.1 → XP_063120013.1  cysteine-rich DPF motif domain-containing protein 1 isoform X1

    RNA

    1. XR_010053014.1 RNA Sequence

    2. XR_010053019.1 RNA Sequence

    3. XR_010053016.1 RNA Sequence

    4. XR_010053018.1 RNA Sequence

    5. XR_010053017.1 RNA Sequence

    6. XR_010053015.1 RNA Sequence

    7. XR_010053013.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001130696.1: Suppressed sequence

      Description
      NM_001130696.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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