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    Fam170a family with sequence similarity 170, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498864, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam170aprovided by RGD
    Official Full Name
    family with sequence similarity 170, member Aprovided by RGD
    Primary source
    RGD:1565393
    See related
    EnsemblRapid:ENSRNOG00000015834 AllianceGenome:RGD:1565393
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565393
    Summary
    Predicted to be involved in fertilization; positive regulation of DNA-templated transcription; and transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human FAM170A (family with sequence similarity 170 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 134.2) See more
    Orthologs
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    Genomic context

    See Fam170a in Genome Data Viewer
    Location:
    18q11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (45707817..45712548)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (43521304..43526035)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (45023910..45028670)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene TNF alpha induced protein 8 Neighboring gene uncharacterized LOC120098293 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 4 Neighboring gene uncharacterized LOC120098292 Neighboring gene uncharacterized LOC102555171 Neighboring gene pseudouridine 5'-phosphatase

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in nucleus  
    located_in nucleus  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126293.2NP_001119765.2  protein FAM170A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      B1H287, F7EWY4
      Related
      ENSRNOP00000034150.7, ENSRNOT00000039379.6
      Conserved Domains (1) summary
      pfam17734
      Location:153270
      Spt46; Spermatogenesis-associated protein 46

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      45707817..45712548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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