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    Catsperg cation channel sperm associated auxiliary subunit gamma [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292767, updated on 9-Dec-2024

    Summary

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    Symbol
    Catspergprovided by RGD
    Full Name
    cation channel sperm associated auxiliary subunit gammaprovided by RGD
    Primary source
    RGD:1310942
    See related
    EnsemblRapid:ENSRNOG00000060693 AllianceGenome:RGD:1310942
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Catsperg1; RGD1310942
    Summary
    Predicted to be located in sperm principal piece. Predicted to be part of CatSper complex. Orthologous to human CATSPERG (cation channel sperm associated auxiliary subunit gamma). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 180.6), Thymus (RPKM 62.3) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Catsperg in Genome Data Viewer
    Location:
    1q21
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (93616209..93646970, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (84488728..84519495, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (88131282..88162609, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene MARCKS-related protein-like Neighboring gene large ribosomal subunit protein eL27-like Neighboring gene proteasome 26S subunit, non-ATPase 8 Neighboring gene similar to human chromosome 19 open reading frame 33 Neighboring gene potassium two pore domain channel subfamily K member 6 Neighboring gene Yip1 interacting factor homolog B, membrane trafficking protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A novel, single, transmembrane protein CATSPERG is associated with CATSPER1 channel protein. Wang H, et al. Biol Reprod, 2009 Sep. PMID 19516020, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of CatSper complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of CatSper complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in sperm principal piece IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cation channel sperm-associated auxiliary subunit gamma
    Names
    cation channel sperm-associated protein subunit gamma
    cation channel sperm-associated protein subunit gamma 1-like
    cation channel, sperm-associated, gamma 1
    catsper channel auxiliary subunit gamma 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001170340.1 → NP_001163811.1  cation channel sperm-associated auxiliary subunit gamma precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:13 → 972
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      93616209..93646970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039104388.2 → XP_038960316.1  cation channel sperm-associated auxiliary subunit gamma isoform X9

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:54 → 985
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    2. XM_006228722.5 → XP_006228784.1  cation channel sperm-associated auxiliary subunit gamma isoform X6

      UniProtKB/TrEMBL
      A0A0G2K5S0, A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:60 → 1020
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    3. XM_039104337.2 → XP_038960265.1  cation channel sperm-associated auxiliary subunit gamma isoform X5

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:54 → 1025
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    4. XM_063283477.1 → XP_063139547.1  cation channel sperm-associated auxiliary subunit gamma isoform X4

      UniProtKB/TrEMBL
      A0A8I6AH60
      Related
      ENSRNOP00000073534.2, ENSRNOT00000087411.3

    5. XM_039104333.2 → XP_038960261.1  cation channel sperm-associated auxiliary subunit gamma isoform X3

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:54 → 1030
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    6. XM_008759126.4 → XP_008757348.1  cation channel sperm-associated auxiliary subunit gamma isoform X8

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:60 → 995
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    7. XM_008759124.4 → XP_008757346.1  cation channel sperm-associated auxiliary subunit gamma isoform X2

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:60 → 1031
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    8. XM_039104339.2 → XP_038960267.1  cation channel sperm-associated auxiliary subunit gamma isoform X7

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:54 → 1000
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    9. XM_039104318.2 → XP_038960246.1  cation channel sperm-associated auxiliary subunit gamma isoform X1

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:54 → 1036
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    10. XM_039104350.2 → XP_038960278.1  cation channel sperm-associated auxiliary subunit gamma isoform X10

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:1 → 856
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    11. XM_039104359.2 → XP_038960287.1  cation channel sperm-associated auxiliary subunit gamma isoform X10

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:1 → 856
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    12. XM_039104365.2 → XP_038960293.1  cation channel sperm-associated auxiliary subunit gamma isoform X10

      UniProtKB/TrEMBL
      A0A8I6AH60
      Conserved Domains (1) summary
      pfam15064
      Location:1 → 856
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    13. XM_039104372.2 → XP_038960300.1  cation channel sperm-associated auxiliary subunit gamma isoform X12

      Conserved Domains (1) summary
      pfam15064
      Location:1 → 729
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    14. XM_039104379.2 → XP_038960307.1  cation channel sperm-associated auxiliary subunit gamma isoform X14

      Conserved Domains (1) summary
      pfam15064
      Location:1 → 551
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    15. XM_039104375.2 → XP_038960303.1  cation channel sperm-associated auxiliary subunit gamma isoform X13

      Conserved Domains (1) summary
      pfam15064
      Location:1 → 587
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    16. XM_063283507.1 → XP_063139577.1  cation channel sperm-associated auxiliary subunit gamma isoform X11

    17. XM_039104386.2 → XP_038960314.1  cation channel sperm-associated auxiliary subunit gamma isoform X15

      Conserved Domains (1) summary
      pfam15064
      Location:54 → 561
      CATSPERG; Cation channel sperm-associated protein subunit gamma

    18. XM_063283525.1 → XP_063139595.1  cation channel sperm-associated auxiliary subunit gamma isoform X16

    RNA

    1. XR_010064605.1 RNA Sequence

    2. XR_005501787.2 RNA Sequence

    3. XR_010064606.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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