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    Ccser1 coiled-coil serine-rich protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500153, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccser1provided by RGD
    Official Full Name
    coiled-coil serine-rich protein 1provided by RGD
    Primary source
    RGD:1565731
    See related
    EnsemblRapid:ENSRNOG00000029321 AllianceGenome:RGD:1565731
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam190a; RGD1565731
    Summary
    Human ortholog(s) of this gene implicated in cocaine dependence. Orthologous to human CCSER1 (coiled-coil serine rich protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 114.6), Kidney (RPKM 82.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccser1 in Genome Data Viewer
    Location:
    4q24-q31
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (91483896..92720439)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (90153873..91391441)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (91235885..92516800)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 6, catalytic subunit, pseuidogene 1 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC120102492 Neighboring gene high mobility group protein B1-like Neighboring gene developmental pluripotency-associated protein 2-like Neighboring gene U7 small nuclear RNA Neighboring gene phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    serine-rich coiled-coil domain-containing protein 1
    Names
    family with sequence similarity 190, member A
    protein FAM190A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134622.1 → NP_001128094.1  serine-rich coiled-coil domain-containing protein 1

      See identical proteins and their annotated locations for NP_001128094.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474042
      UniProtKB/TrEMBL
      A6KF12

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      91483896..92720439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108140.2 → XP_038964068.1  serine-rich coiled-coil domain-containing protein 1 isoform X3

    2. XM_017592802.3 → XP_017448291.1  serine-rich coiled-coil domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      D3ZTW6
      Related
      ENSRNOP00000044122.4, ENSRNOT00000043827.6

    3. XM_017592805.3 → XP_017448294.1  serine-rich coiled-coil domain-containing protein 1 isoform X2

      Related
      ENSRNOP00000098269.2, ENSRNOT00000120634.2

    4. XM_017592806.3 → XP_017448295.1  serine-rich coiled-coil domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      D3ZTW6

    5. XM_017592808.3 → XP_017448297.1  serine-rich coiled-coil domain-containing protein 1 isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

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