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    Lancl3 LanC like family member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302540, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lancl3provided by RGD
    Official Full Name
    LanC like family member 3provided by RGD
    Primary source
    RGD:1563642
    See related
    EnsemblRapid:ENSRNOG00000003756 AllianceGenome:RGD:1563642
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563642
    Summary
    Predicted to be involved in carbohydrate metabolic process and peptide modification. Predicted to be active in plasma membrane. Orthologous to human LANCL3 (LanC like family member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 37.9), Kidney (RPKM 9.5) and 3 other tissues See more
    Orthologs
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    Genomic context

    See Lancl3 in Genome Data Viewer
    Location:
    Xq12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (16150991..16282425, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (13478499..13609934, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (14358224..14490340)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120099348 Neighboring gene uncharacterized LOC102553061 Neighboring gene X-linked Kx blood group antigen, Kell and VPS13A binding protein Neighboring gene H2A histone family member L2 like Neighboring gene DnaJ heat shock protein family (Hsp40) member A1, pseudogene 1 Neighboring gene ferritin heavy chain 1 like 1 Neighboring gene ferritin heavy chain-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    lanC-like protein 3
    Names
    LanC lantibiotic synthetase component C-like 3
    LanC like 3
    lanC-like protein 3-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191728.2NP_001178657.1  lanC-like protein 3

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      D3ZG98
      Related
      ENSRNOP00000005042.5, ENSRNOT00000005042.7
      Conserved Domains (1) summary
      cd04794
      Location:65414
      euk_LANCL; Eukaryotic Lanthionine synthetase C-like protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      16150991..16282425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)