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    Ccdc196 coiled-coil domain containing 196 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500678, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc196provided by RGD
    Official Full Name
    coiled-coil domain containing 196provided by RGD
    Primary source
    RGD:1562540
    See related
    EnsemblRapid:ENSRNOG00000033423 AllianceGenome:RGD:1562540
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562540
    Summary
    Orthologous to human CCDC196 (coiled-coil domain containing 196). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 110.3) See more
    Orthologs
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    Genomic context

    See Ccdc196 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (102646156..102672145)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (96913960..96939415)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (101288951..101304220)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103557 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene gephyrin Neighboring gene eukaryotic translation initiation factor 5, pseudogene 7 Neighboring gene adenylate kinase 2, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    putative coiled-coil domain-containing protein 196

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134630.1NP_001128102.1  putative coiled-coil domain-containing protein 196 isoform 1

      See identical proteins and their annotated locations for NP_001128102.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473947
      UniProtKB/TrEMBL
      A6HCD4, D4A4F0
      Related
      ENSRNOP00000042589.3, ENSRNOT00000046901.5
    2. NM_001434353.1NP_001421282.1  putative coiled-coil domain-containing protein 196 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      102646156..102672145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063262316.1XP_063118386.1  putative coiled-coil domain-containing protein 196 isoform X2

    2. XM_063262309.1XP_063118379.1  putative coiled-coil domain-containing protein 196 isoform X1

    3. XM_063262310.1XP_063118380.1  putative coiled-coil domain-containing protein 196 isoform X1

    4. XM_063262311.1XP_063118381.1  putative coiled-coil domain-containing protein 196 isoform X1

    5. XM_063262315.1XP_063118385.1  putative coiled-coil domain-containing protein 196 isoform X2

    6. XM_063262313.1XP_063118383.1  putative coiled-coil domain-containing protein 196 isoform X2

    7. XM_039112727.2XP_038968655.1  putative coiled-coil domain-containing protein 196 isoform X1

    8. XM_039112731.2XP_038968659.1  putative coiled-coil domain-containing protein 196 isoform X3

    9. XM_063262314.1XP_063118384.1  putative coiled-coil domain-containing protein 196 isoform X2

    10. XM_039112725.2XP_038968653.1  putative coiled-coil domain-containing protein 196 isoform X1

    11. XM_063262312.1XP_063118382.1  putative coiled-coil domain-containing protein 196 isoform X2

    12. XM_039112728.2XP_038968656.1  putative coiled-coil domain-containing protein 196 isoform X1

    13. XM_039112723.2XP_038968651.1  putative coiled-coil domain-containing protein 196 isoform X1

    RNA

    1. XR_010052137.1 RNA Sequence

    2. XR_010052138.1 RNA Sequence

    3. XR_005505564.2 RNA Sequence

    4. XR_010052144.1 RNA Sequence

    5. XR_010052145.1 RNA Sequence

    6. XR_010052146.1 RNA Sequence

    7. XR_005505563.2 RNA Sequence

    8. XR_010052142.1 RNA Sequence

    9. XR_010052143.1 RNA Sequence

    10. XR_010052135.1 RNA Sequence

    11. XR_010052136.1 RNA Sequence

    12. XR_010052141.1 RNA Sequence

    13. XR_005505565.2 RNA Sequence

    14. XR_010052140.1 RNA Sequence

    15. XR_010052139.1 RNA Sequence

    16. XR_005505562.2 RNA Sequence