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    Spmap2l sperm microtubule associated protein 2 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498350, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Spmap2lprovided by RGD
    Official Full Name
    sperm microtubule associated protein 2 likeprovided by RGD
    Primary source
    RGD:1562571
    See related
    EnsemblRapid:ENSRNOG00000002085 AllianceGenome:RGD:1562571
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Thegl
    Summary
    Orthologous to human SPMAP2L (sperm microtubule associated protein 2 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 91.9), Thymus (RPKM 12.5) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Spmap2l in Genome Data Viewer
    Location:
    14p11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (31464382..31507027, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (31110104..31152487, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (33389511..33431862, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096732 Neighboring gene HOP homeobox Neighboring gene uncharacterized LOC120096733 Neighboring gene uncharacterized LOC134481837 Neighboring gene uncharacterized LOC120096735 Neighboring gene ARF like GTPase 9 Neighboring gene signal recognition particle 72 Neighboring gene uncharacterized LOC120096737

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    sperm microtubule associated protein 2-like
    Names
    testicular haploid expressed gene protein-like
    theg spermatid protein-like
    theg spermatid-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017498.1 → NP_001017498.1  sperm microtubule associated protein 2-like

      See identical proteins and their annotated locations for NP_001017498.1

      Status: PROVISIONAL

      Source sequence(s)
      BC087065
      UniProtKB/Swiss-Prot
      Q5PQR6
      UniProtKB/TrEMBL
      A0A8I5ZRA6
      Related
      ENSRNOP00000002860.4, ENSRNOT00000002860.6
      Conserved Domains (1) summary
      pfam14912
      Location:203 → 270
      THEG; Testicular haploid expressed repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      31464382..31507027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006250846.5 → XP_006250908.1  sperm microtubule associated protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZRA6
      Conserved Domains (1) summary
      pfam14912
      Location:347 → 406
      THEG; Testicular haploid expressed repeat

    2. XM_039092284.2 → XP_038948212.1  sperm microtubule associated protein 2-like isoform X2

      Conserved Domains (1) summary
      pfam14912
      Location:90 → 157
      THEG; Testicular haploid expressed repeat

    3. XM_063273462.1 → XP_063129532.1  sperm microtubule associated protein 2-like isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5PQR6.1 GenPept UniProtKB/Swiss-Prot:Q5PQR6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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