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    Vom1r42 vomeronasal 1 receptor 42 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 494303, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Vom1r42provided by RGD
    Official Full Name
    vomeronasal 1 receptor 42provided by RGD
    Primary source
    RGD:1549734
    See related
    AllianceGenome:RGD:1549734
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    V1rg16
    Summary
    Orthologous to human ZSCAN4 (zinc finger and SCAN domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Vom1r42 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (81190461..81213149)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (72110630..72140964)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (67274422..67317988, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 494 like 1 Neighboring gene vomeronasal 1 receptor pseudogene 49 Neighboring gene protein YIPF5-like Neighboring gene vomeronasal 1 receptor pseudogene 50 Neighboring gene zinc finger and SCAN domain containing protein 4C-like Neighboring gene zinc finger and SCAN domain containing 4 like, pseudogene 1 Neighboring gene uncharacterized LOC134482887

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    vomeronasal 1 receptor 42; vomeronasal type-1 receptor 3; vomeronasal type-1 receptor 4
    Names
    vomernasal 1 receptor Vom1r42
    vomeronasal 1 receptor, G16
    vomeronasal V1r-type receptor V1rg16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008959.2 → NP_001008959.1  vomeronasal 1 receptor 42

      See identical proteins and their annotated locations for NP_001008959.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      81190461..81213149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017589540.3 → XP_017445029.1  vomeronasal type-1 receptor 4 isoform X1

      UniProtKB/TrEMBL
      Q5J3K4
      Conserved Domains (2) summary
      cd14964
      Location:10 → 34
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:10 → 299
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    2. XM_017589539.3 → XP_017445028.1  vomeronasal type-1 receptor 4 isoform X1

      UniProtKB/TrEMBL
      Q5J3K4
      Conserved Domains (2) summary
      cd14964
      Location:10 → 34
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:10 → 299
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    3. XM_039100711.2 → XP_038956639.1  vomeronasal type-1 receptor 4 isoform X1

      Conserved Domains (2) summary
      cd14964
      Location:10 → 34
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:10 → 299
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    4. XM_063277370.1 → XP_063133440.1  vomeronasal type-1 receptor 4 isoform X1

    5. XM_063277378.1 → XP_063133448.1  vomeronasal type-1 receptor 3 isoform X3

    6. XM_063277375.1 → XP_063133445.1  vomeronasal type-1 receptor 3 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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