U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Ctsq cathepsin Q [ Rattus norvegicus (Norway rat) ]

    Gene ID: 246147, updated on 27-Dec-2024

    Summary

    Official Symbol
    Ctsqprovided by RGD
    Official Full Name
    cathepsin Qprovided by RGD
    Primary source
    RGD:631421
    See related
    EnsemblRapid:ENSRNOG00000080035 AllianceGenome:RGD:631421
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    CatQ
    Summary
    Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be active in extracellular space and lysosome. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ctsq in Genome Data Viewer
    Location:
    17p14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (3633621..3639180)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (3627996..3633564)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (3991330..3996889)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene cathepsin R Neighboring gene cathepsin R like 1 Neighboring gene cathepsin Q like 1 Neighboring gene cathepsin Q-like 2

    Genomic regions, transcripts, and products

    General gene information

    Clone Names

    • MGC125032

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in extracellular space  
    is_active_in lysosome  
    located_in lysosome  

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_139262.2NP_640355.1  cathepsin Q precursor

      See identical proteins and their annotated locations for NP_640355.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q9QZE3
      UniProtKB/TrEMBL
      A6KAE1
      Related
      ENSRNOP00000066947.3, ENSRNOT00000073585.4
      Conserved Domains (3) summary
      PTZ00203
      Location:4341
      PTZ00203; cathepsin L protease; Provisional
      smart00848
      Location:2987
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:125342
      Peptidase_C1; Papain family cysteine protease

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      3633621..3639180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    External link. Please review our privacy policy.