Garin3 golgi associated RAB2 interactor family member 3 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Garin3provided by RGD
Official Full Name: golgi associated RAB2 interactor family member 3provided by RGD
Primary source: RGD:1563555
See related: EnsemblRapid:ENSRNOG00000021425 AllianceGenome:RGD:1563555
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Fam71b
Summary: Predicted to be located in Golgi apparatus. Orthologous to human GARIN3 (golgi associated RAB2 interactor family member 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 110.6) See more
Orthologs: human mouse all
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Genomic context

Location:: 10q21

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (31331196..31334434)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (30829877..30833115)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (31508549..31511787)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in Cajal body	IEA Inferred from Electronic Annotation more info
located_in Golgi apparatus	ISO Inferred from Sequence Orthology more info
located_in Golgi apparatus	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: Golgi-associated RAB2B interactor protein 3

Names: Golgi associated RAB2B interactor protein 3; Golgi-associated Rab2B interactor-like 3; family with sequence similarity 71, member B; golgi associated RAB2B interactor family member 3; protein FAM71B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001025031.1 → NP_001020202.2 Golgi-associated RAB2B interactor protein 3

Status: VALIDATED

Source sequence(s)

BC082044

UniProtKB/Swiss-Prot

Q66H38

UniProtKB/TrEMBL

A0A140TAE4

Related

ENSRNOP00000030691.6, ENSRNOT00000031580.7

Conserved Domains (1) summary

pfam12480
Location:120 → 186

DUF3699; Protein of unknown function (DUF3699)