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    Fam217a family with sequence similarity 217, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498735, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam217aprovided by RGD
    Official Full Name
    family with sequence similarity 217, member Aprovided by RGD
    Primary source
    RGD:1566214
    See related
    EnsemblRapid:ENSRNOG00000016672 AllianceGenome:RGD:1566214
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM217A (family with sequence similarity 217 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 42.6), Kidney (RPKM 14.5) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Fam217a in Genome Data Viewer
    Location:
    17p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (30180403..30186833)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (29975025..29981455)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (30670137..30676566)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene enoyl-CoA delta isomerase 2 Neighboring gene enoyl-Coenzyme A delta isomerase 3 Neighboring gene testis expressed 56 Neighboring gene pre-mRNA processing factor 4B Neighboring gene high mobility group box 1, pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein FAM217A
    Names
    uncharacterized protein C6orf146 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271083.1NP_001258012.1  protein FAM217A

      Status: PROVISIONAL

      Source sequence(s)
      BC083911, JAXUCZ010000017
      UniProtKB/TrEMBL
      D3ZKT6
      Related
      ENSRNOP00000082913.2, ENSRNOT00000104358.2
      Conserved Domains (1) summary
      pfam15344
      Location:206409
      FAM217; FAM217 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      30180403..30186833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)