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    Galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304571, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Galnt9provided by RGD
    Official Full Name
    polypeptide N-acetylgalactosaminyltransferase 9provided by RGD
    Primary source
    RGD:1311523
    See related
    EnsemblRapid:ENSRNOG00000037476 AllianceGenome:RGD:1311523
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT9 (polypeptide N-acetylgalactosaminyltransferase 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 75.8) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Galnt9 in Genome Data Viewer
    Location:
    12q16
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (51710176..51788388, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (46050395..46128626, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (52106506..52187205, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481216 Neighboring gene DEAD-box helicase 51 Neighboring gene nucleolar complex associated 4 homolog Neighboring gene uncharacterized LOC134481339 Neighboring gene fibrosin-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polypeptide N-acetylgalactosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein O-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 9
    Names
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
    NP_001100621.1
    NP_001116116.1
    XP_008767555.1
    XP_063127463.1
    XP_063127464.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107151.2 → NP_001100621.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform B

      See identical proteins and their annotated locations for NP_001100621.1

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A6J2A1
      Conserved Domains (3) summary
      cd00161
      Location:100 → 228
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00652
      Location:98 → 226
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
      cl11394
      Location:1 → 87
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. NM_001122644.1 → NP_001116116.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform A

      See identical proteins and their annotated locations for NP_001116116.1

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A6J2A0, D3ZQA1
      Related
      ENSRNOP00000053563.2, ENSRNOT00000056722.5
      Conserved Domains (3) summary
      cd02510
      Location:155 → 454
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      cd00161
      Location:467 → 595
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00652
      Location:465 → 593
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      51710176..51788388 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008769333.4 → XP_008767555.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

      Conserved Domains (3) summary
      cd02510
      Location:155 → 435
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      cd00161
      Location:448 → 576
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00652
      Location:446 → 574
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_063271393.1 → XP_063127463.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K4G1
      Related
      ENSRNOP00000073030.2, ENSRNOT00000088839.3

    3. XM_063271394.1 → XP_063127464.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X3

      UniProtKB/TrEMBL
      A6J2A1
    Nucleotide Protein Strain
    Heading Accession and Version

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