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    Golga7b golgin A7 family, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309378, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Golga7bprovided by RGD
    Official Full Name
    golgin A7 family, member Bprovided by RGD
    Primary source
    RGD:1583839
    See related
    EnsemblRapid:ENSRNOG00000015051 AllianceGenome:RGD:1583839
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable enzyme binding activity. Predicted to be involved in protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be part of palmitoyltransferase complex. Orthologous to human GOLGA7B (golgin A7 family member B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 114.9), Testes (RPKM 17.2) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Golga7b in Genome Data Viewer
    Location:
    1q54
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (250999268..251030169)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (241056427..241080890)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (261494511..261514413)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene Josephin domain containing 2, pseudogene 1 Neighboring gene secreted frizzled-related protein 5 Neighboring gene uncharacterized LOC102547392 Neighboring gene microRNA 3085 Neighboring gene cartilage acidic protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. S-acylated Golga7b stabilises DHHC5 at the plasma membrane to regulate cell adhesion. Woodley KT, et al. EMBO Rep, 2019 Oct 4. PMID 31402609, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables enzyme binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein targeting to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of palmitoyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    golgin subfamily A member 7B
    Names
    Golgin subfamily A member 7B
    golgi autoantigen, golgin subfamily a, 7B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305219.1 → NP_001292148.1  golgin subfamily A member 7B

      See identical proteins and their annotated locations for NP_001292148.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6JHB2, F1M362
      Related
      ENSRNOP00000020390.6, ENSRNOT00000020390.9
      Conserved Domains (1) summary
      pfam10256
      Location:21 → 133
      Erf4; Golgin subfamily A member 7/ERF4 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      250999268..251030169
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039080108.2 → XP_038936036.1  golgin subfamily A member 7B isoform X1

      UniProtKB/TrEMBL
      A6JHB2, F1M362
      Conserved Domains (1) summary
      pfam10256
      Location:21 → 133
      Erf4; Golgin subfamily A member 7/ERF4 family

    2. XM_006231421.4 → XP_006231483.1  golgin subfamily A member 7B isoform X1

      See identical proteins and their annotated locations for XP_006231483.1

      UniProtKB/TrEMBL
      A6JHB2, F1M362
      Conserved Domains (1) summary
      pfam10256
      Location:21 → 133
      Erf4; Golgin subfamily A member 7/ERF4 family
    Nucleotide Protein Strain
    Heading Accession and Version

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