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    Fam210a family with sequence similarity 210, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307343, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam210aprovided by RGD
    Official Full Name
    family with sequence similarity 210, member Aprovided by RGD
    Primary source
    RGD:1359600
    See related
    EnsemblRapid:ENSRNOG00000080800 AllianceGenome:RGD:1359600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1359600
    Summary
    Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Orthologous to human FAM210A (family with sequence similarity 210 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 270.0), Muscle (RPKM 242.7) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Fam210a in Genome Data Viewer
    Location:
    18q12.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (64116274..64155971, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (61846447..61886123, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (64045023..64084594, complement)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor class A domain containing 4 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 118 Neighboring gene tRNA methyltransferase activator subunit 11-2, pseudogene 1 Neighboring gene RNA (guanine-7-) methyltransferase Neighboring gene melanocortin 5 receptor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC94550

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm  
    located_in cytoplasm  
    located_in membrane  
    is_active_in mitochondrion  
    located_in mitochondrion  
    located_in mitochondrion  

    General protein information

    Preferred Names
    protein FAM210A
    Names
    LEA_4 domain containing protein RGD1359600
    uncharacterized protein C18orf19 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007688.4NP_001007689.1  protein FAM210A

      See identical proteins and their annotated locations for NP_001007689.1

      Status: VALIDATED

      Source sequence(s)
      BC083687, JAXUCZ010000018
      UniProtKB/Swiss-Prot
      Q5XIJ4
      UniProtKB/TrEMBL
      A6IXX1
      Related
      ENSRNOP00000105562.1, ENSRNOT00000139091.1
      Conserved Domains (1) summary
      pfam06916
      Location:125212
      DUF1279; Protein of unknown function (DUF1279)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      64116274..64155971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063277310.1XP_063133380.1  protein FAM210A isoform X1

      UniProtKB/Swiss-Prot
      Q5XIJ4
      UniProtKB/TrEMBL
      A6IXX1

    RNA

    1. XR_010059567.1 RNA Sequence

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