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    Oscp1 organic solute carrier partner 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362595, updated on 9-Dec-2024

    Summary

    Official Symbol
    Oscp1provided by RGD
    Official Full Name
    organic solute carrier partner 1provided by RGD
    Primary source
    RGD:1306596
    See related
    EnsemblRapid:ENSRNOG00000026978 AllianceGenome:RGD:1306596
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306596
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in xenobiotic detoxification by transmembrane export across the plasma membrane. Predicted to be located in basal plasma membrane. Predicted to be part of small ribosomal subunit. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human OSCP1 (organic solute carrier partner 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 663.9), Brain (RPKM 79.1) and 2 other tissues See more
    Orthologs
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    Genomic context

    See Oscp1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (143618186..143649765)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138334552..138365220)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144067391..144099693)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene colony stimulating factor 3 receptor Neighboring gene mitochondrial ribosomal protein S15 Neighboring gene ribosomal protein S14, pseudogene 7 Neighboring gene LSM10, U7 small nuclear RNA associated Neighboring gene serine/threonine kinase 40

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Interactions

    General gene information

    Clone Names

    • MGC116206

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in basal plasma membrane  
    located_in basal plasma membrane  
    is_active_in cytoplasm  
    located_in cytoplasm  
    located_in cytoplasm  
    is_active_in plasma membrane  
    part_of small ribosomal subunit  

    General protein information

    Preferred Names
    protein OSCP1
    Names
    organic solute carrier protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001029923.1NP_001025094.1  protein OSCP1

      See identical proteins and their annotated locations for NP_001025094.1

      Status: PROVISIONAL

      Source sequence(s)
      BC098048
      UniProtKB/Swiss-Prot
      Q4QQS3
      UniProtKB/TrEMBL
      A7VLG3
      Related
      ENSRNOP00000103637.1, ENSRNOT00000163123.1
      Conserved Domains (1) summary
      pfam10188
      Location:18189
      Oscp1; Organic solute transport protein 1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      143618186..143649765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017593508.3XP_017448997.1  protein OSCP1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AH97, A7VLG3
      Related
      ENSRNOP00000034112.5, ENSRNOT00000037246.7
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