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    LOC102552128 late cornified envelope protein 1C-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102552128, updated on 9-Dec-2024

    Summary

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    Symbol
    LOC102552128provided by RGD
    Full Name
    late cornified envelope protein 1C-likeprovided by RGD
    Primary source
    RGD:7532496
    See related
    AllianceGenome:RGD:7532496
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in keratinization. Orthologous to several human genes including LCE1A (late cornified envelope 1A); LCE1B (late cornified envelope 1B); and LCE1C (late cornified envelope 1C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 29.8) See more
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    Genomic context

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    See LOC102552128 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (181018378..181018767, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (178322769..178323158, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (193007315..193008931, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B6, pseudogene 8 Neighboring gene late cornified envelope 1F Neighboring gene late cornified envelope 1F like 1 Neighboring gene late cornified envelope protein 1E-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in keratinization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    late cornified envelope protein 1C-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      181018378..181018767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006232825.4 → XP_006232887.1  late cornified envelope protein 1C-like

      See identical proteins and their annotated locations for XP_006232887.1

      UniProtKB/TrEMBL
      A0A8I6A3H2, A0A8I6ABX7
    Nucleotide Protein Strain
    Heading Accession and Version

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