Fam171a2 family with sequence similarity 171, member A2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Fam171a2provided by RGD
Official Full Name: family with sequence similarity 171, member A2provided by RGD
Primary source: RGD:1307966
See related: EnsemblRapid:ENSRNOG00000021041 AllianceGenome:RGD:1307966
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1307966
Summary: Predicted to be located in membrane. Orthologous to human FAM171A2 (family with sequence similarity 171 member A2). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Brain (RPKM 63.2), Lung (RPKM 40.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 10q32.1

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (87894049..87904213, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (87393888..87404051, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (90383111..90393476, complement)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D16195 (e-PCR)
- UniSTS:124727

D10Wox31 (e-PCR)
- UniSTS:518753

D10Wox30 (e-PCR)
- UniSTS:519019

RH128403 (e-PCR)
- UniSTS:211711

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: family with sequence similarity 171, member A2; protein FAM171A2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001430318.1 → NP_001417247.1 family with sequence similarity 171, member A2 precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000010

UniProtKB/TrEMBL

A6HJL0, D3ZT47

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086028.1 Reference GRCr8

Range

87894049..87904213 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006247473.5 → XP_006247535.1 protein FAM171A2 isoform X2

UniProtKB/TrEMBL

A6HJL0

Conserved Domains (1) summary

pfam10577
Location:41 → 813

UPF0560; uncharacterized protein family UPF0560
XM_002727821.7 → XP_002727867.2 protein FAM171A2 isoform X1

Related

ENSRNOP00000028563.6, ENSRNOT00000028563.8

Conserved Domains (1) summary

pfam10577
Location:41 → 820

UPF0560; uncharacterized protein family UPF0560
XM_039087758.2 → XP_038943686.1 protein FAM171A2 isoform X3

Conserved Domains (1) summary

pfam10577
Location:1 → 636

UPF0560; Uncharacterized protein family UPF0560
XM_039087759.2 → XP_038943687.1 protein FAM171A2 isoform X3

Conserved Domains (1) summary

pfam10577
Location:1 → 636

UPF0560; Uncharacterized protein family UPF0560