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    Asnsd1 asparagine synthetase domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299507, updated on 27-Dec-2024

    Summary

    Official Symbol
    Asnsd1provided by RGD
    Official Full Name
    asparagine synthetase domain containing 1provided by RGD
    Primary source
    RGD:1306332
    See related
    EnsemblRapid:ENSRNOG00000003942 AllianceGenome:RGD:1306332
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306332
    Summary
    Predicted to enable asparagine synthase (glutamine-hydrolyzing) activity. Predicted to be involved in asparagine biosynthetic process. Predicted to act upstream of or within adipose tissue development; skeletal muscle tissue development; and transdifferentiation. Orthologous to human ASNSD1 (asparagine synthetase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 350.0), Muscle (RPKM 221.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Asnsd1 in Genome Data Viewer
    Location:
    9q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (55618799..55631064)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (48126808..48139073)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (52988042..53009054)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene glutamic-oxaloacetic transaminase 2, pseudogene 3 Neighboring gene solute carrier family 40 member 1 Neighboring gene proteolipid protein 2 like 1 Neighboring gene ASNSD1 upstream open reading frame Neighboring gene ankyrin and armadillo repeat containing Neighboring gene O-sialoglycoprotein endopeptidase-like 1 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene ORMDL sphingolipid biosynthesis regulator 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    General protein information

    Preferred Names
    asparagine synthetase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106763.1NP_001100233.1  asparagine synthetase domain-containing protein 1

      See identical proteins and their annotated locations for NP_001100233.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473965
      UniProtKB/TrEMBL
      A6INT9, D3ZWR3
      Related
      ENSRNOP00000056002.2, ENSRNOT00000059233.4
      Conserved Domains (2) summary
      cd01991
      Location:322603
      Asn_Synthase_B_C; The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the ...
      cd03766
      Location:1179
      Gn_AT_II_novel; This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      55618799..55631064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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