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    C10h16orf90 similar to human chromosome 16 open reading frame 90 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360483, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C10h16orf90provided by RGD
    Official Full Name
    similar to human chromosome 16 open reading frame 90provided by RGD
    Primary source
    RGD:1561796
    See related
    EnsemblRapid:ENSRNOG00000007268 AllianceGenome:RGD:1561796
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561796
    Summary
    Orthologous to human C16orf90 (chromosome 16 open reading frame 90). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 211.8), Kidney (RPKM 61.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C10h16orf90 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (12125235..12138441)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (11618867..11632151)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (11878043..11880822)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene SLX4 structure-specific endonuclease subunit Neighboring gene NLR family, CARD domain containing 3 Neighboring gene clusterin associated protein 1 Neighboring gene N(alpha)-acetyltransferase 60, NatF catalytic subunit Neighboring gene zinc finger protein 597 Neighboring gene zinc finger protein 174

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    RGD1561796; uncharacterized protein C16orf90 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430219.1 → NP_001417148.1  RGD1561796 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      F1M3A2

    2. NM_001430220.1 → NP_001417149.1  RGD1561796 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A8I5Y1Y7, F1M3A2

    3. NM_001430221.1 → NP_001417150.1  RGD1561796 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A8I5Y1Y7, F1M3A2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      12125235..12138441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270078.1 → XP_063126148.1  uncharacterized protein C16orf90 homolog isoform X2

      Related
      ENSRNOP00000078112.1, ENSRNOT00000116734.2

    2. XM_340757.10 → XP_340758.2  uncharacterized protein C16orf90 homolog isoform X3

      See identical proteins and their annotated locations for XP_340758.2

      UniProtKB/TrEMBL
      A0A096MJ85, F1M3A2
      Related
      ENSRNOP00000068034.1, ENSRNOT00000076532.4
      Conserved Domains (1) summary
      pfam15486
      Location:2 → 162
      DUF4644; Domain of unknown function (DUF4644)

    3. XM_006245837.5 → XP_006245899.1  uncharacterized protein C16orf90 homolog isoform X2

      Conserved Domains (1) summary
      pfam15486
      Location:7 → 167
      DUF4644; Domain of unknown function (DUF4644)

    4. XM_006245836.5 → XP_006245898.1  uncharacterized protein C16orf90 homolog isoform X1

      Related
      ENSRNOP00000063329.3, ENSRNOT00000068577.4
      Conserved Domains (1) summary
      pfam15486
      Location:17 → 176
      DUF4644; Domain of unknown function (DUF4644)

    RNA

    1. XR_010055524.1 RNA Sequence

    2. XR_010055523.1 RNA Sequence

    3. XR_010055521.1 RNA Sequence

    4. XR_010055522.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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