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    RGD1559600 RGD1559600 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499256, updated on 27-Nov-2024

    Summary

    Official Symbol
    RGD1559600provided by RGD
    Official Full Name
    RGD1559600provided by RGD
    Primary source
    RGD:1559600
    See related
    EnsemblRapid:ENSRNOG00000042232 AllianceGenome:RGD:1559600
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Liver (RPKM 104.1), Kidney (RPKM 64.0) and 1 other tissue See more
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    Genomic context

    See RGD1559600 in Genome Data Viewer
    Location:
    1q35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (183401989..183418946, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (173973318..173988758, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (189347190..189364267, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase-like, testis expressed Neighboring gene acyl-CoA synthetase medium-chain family member 5 Neighboring gene acyl-CoA synthetase medium-chain family member 2 Neighboring gene acyl-CoA synthetase medium-chain family member 1 Neighboring gene acyl-CoA synthetase medium-chain family member 4 Neighboring gene uncharacterized LOC134483776 Neighboring gene THUMP domain containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein LOC499256

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109153.1NP_001102623.1  uncharacterized protein LOC499256

      See identical proteins and their annotated locations for NP_001102623.1

      Status: PREDICTED

      Source sequence(s)
      CH473956
      UniProtKB/TrEMBL
      A6I8M3, D4A5K8
      Related
      ENSRNOP00000059575.1, ENSRNOT00000066597.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      183401989..183418946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006230140.4XP_006230202.1  uncharacterized protein LOC499256 isoform X1