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    Niban3 niban apoptosis regulator 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498604, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Niban3provided by RGD
    Official Full Name
    niban apoptosis regulator 3provided by RGD
    Primary source
    RGD:1566103
    See related
    EnsemblRapid:ENSRNOG00000039357 AllianceGenome:RGD:1566103
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam129c
    Summary
    Orthologous to human NIBAN3 (niban apoptosis regulator 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 56.0), Lung (RPKM 13.1) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Niban3 in Genome Data Viewer
    Location:
    16p14
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (18341108..18352571)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (18307122..18318589)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (20027100..20038720)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 221 Neighboring gene nucleoredoxin-like 1 Neighboring gene solute carrier family 27 member 1 Neighboring gene 6-phosphogluconolactonase Neighboring gene collagen beta(1-O)galactosyltransferase 1 Neighboring gene unc-13 homolog A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein Niban 3
    Names
    B-cell novel protein 1
    family with sequence similarity 129, member C
    niban-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100908.1 → NP_001094378.1  protein Niban 3

      See identical proteins and their annotated locations for NP_001094378.1

      Status: VALIDATED

      Source sequence(s)
      BC111077, BQ211431
      UniProtKB/TrEMBL
      Q2NL48
      Related
      ENSRNOP00000030537.4, ENSRNOT00000034589.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      18341108..18352571
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017600214.3 → XP_017455703.2  protein Niban 3 isoform X6

    2. XM_039094758.2 → XP_038950686.1  protein Niban 3 isoform X2

    3. XM_039094761.2 → XP_038950689.1  protein Niban 3 isoform X4

    4. XM_017600215.2 → XP_017455704.2  protein Niban 3 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A3N5

    5. XM_039094760.1 → XP_038950688.1  protein Niban 3 isoform X3

    6. XM_039094762.1 → XP_038950690.1  protein Niban 3 isoform X5

      UniProtKB/TrEMBL
      A6K9W9
    Nucleotide Protein Strain
    Heading Accession and Version

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