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    Ptar1 protein prenyltransferase alpha subunit repeat containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 286972, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ptar1provided by RGD
    Official Full Name
    protein prenyltransferase alpha subunit repeat containing 1provided by RGD
    Primary source
    RGD:708369
    See related
    AllianceGenome:RGD:708369
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable protein prenyltransferase activity. Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be involved in protein prenylation. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human PTAR1 (protein prenyltransferase alpha subunit repeat containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 178.7), Thymus (RPKM 153.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ptar1 in Genome Data Viewer
    Location:
    1q51
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (230709731..230753380)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (221283306..221326861)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (241501679..241557651)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S12-like Neighboring gene cilia and flagella associated protein 95 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC120098082 Neighboring gene RNA, U6 small nuclear 65 Neighboring gene amyloid beta precursor protein binding family A member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    contributes_to Rab geranylgeranyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein prenyltransferase alpha subunit repeat-containing protein 1
    Names
    GABAC receptor subunit (Rho2)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105760.2 → NP_001099230.2  protein prenyltransferase alpha subunit repeat-containing protein 1

      See identical proteins and their annotated locations for NP_001099230.2

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/TrEMBL
      A6I0N9, D3ZWG9
      Conserved Domains (2) summary
      PLN02789
      Location:82 → 346
      PLN02789; farnesyltranstransferase
      pfam01239
      Location:180 → 207
      PPTA; Protein prenyltransferase alpha subunit repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      230709731..230753380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063282649.1 → XP_063138719.1  protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A6I0P0
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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