Samd5 sterile alpha motif domain containing 5 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Samd5provided by RGD
Official Full Name: sterile alpha motif domain containing 5provided by RGD
Primary source: RGD:1311012
See related: AllianceGenome:RGD:1311012
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1311012
Summary: Predicted to be involved in regulation of intracellular signal transduction. Predicted to be located in cytoplasm. Orthologous to human SAMD5 (sterile alpha motif domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Kidney (RPKM 55.3), Brain (RPKM 53.6) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1p13

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (5861793..5911153, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (4041547..4090909, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (3713750..3763392, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in regulation of intracellular signal transduction	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: sterile alpha motif domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001108901.1 → NP_001102371.1 sterile alpha motif domain-containing protein 5

See identical proteins and their annotated locations for NP_001102371.1

Status: PROVISIONAL

Source sequence(s)

CH473994

UniProtKB/TrEMBL

A0A8I6ABZ6, A6JP26, D3ZLM9

Conserved Domains (2) summary

cd09527
Location:2 → 64

SAM_Samd5; SAM domain of Samd5 subfamily

smart00454
Location:6 → 65

SAM; Sterile alpha motif