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    Mrps17 mitochondrial ribosomal protein S17 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288621, updated on 9-Dec-2024

    Summary

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    Symbol
    Mrps17provided by RGD
    Full Name
    mitochondrial ribosomal protein S17provided by RGD
    Primary source
    RGD:1307650
    See related
    EnsemblRapid:ENSRNOG00000066020 AllianceGenome:RGD:1307650
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS17 (mitochondrial ribosomal protein S17). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 141.9), Kidney (RPKM 121.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Mrps17 in Genome Data Viewer
    Location:
    12q13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (32584635..32587934, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (26948535..26951828, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (30570386..30573670, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene phosphoserine phosphatase Neighboring gene nipsnap homolog 2 Neighboring gene small nucleolar RNA SNORA76 Neighboring gene septin 14 Neighboring gene 40S ribosomal protein S25 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Ribosome. The structure of the human mitochondrial ribosome. Amunts A, et al. Science, 2015 Apr 3. PMID 25838379, Free PMC Article
    2. Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit. Suzuki T, et al. J Biol Chem, 2001 Aug 31. PMID 11402041
    3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
    4. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    5. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of mitochondrial small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS17m
    Names
    28S ribosomal protein S17, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105923.1 → NP_001099393.1  small ribosomal subunit protein uS17m

      See identical proteins and their annotated locations for NP_001099393.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473973
      UniProtKB/TrEMBL
      A6J0Q4, D3ZTR1
      Related
      ENSRNOP00000076230.3, ENSRNOT00000093534.3
      Conserved Domains (1) summary
      pfam00366
      Location:15 → 83
      Ribosomal_S17; Ribosomal protein S17

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      32584635..32587934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006249264.5 → XP_006249326.1  small ribosomal subunit protein uS17m isoform X1

      See identical proteins and their annotated locations for XP_006249326.1

      UniProtKB/TrEMBL
      A6J0Q4, D3ZTR1
      Conserved Domains (1) summary
      pfam00366
      Location:15 → 83
      Ribosomal_S17; Ribosomal protein S17

    2. XM_063271165.1 → XP_063127235.1  small ribosomal subunit protein uS17m isoform X1

      UniProtKB/TrEMBL
      A6J0Q4, D3ZTR1

    3. XM_017598301.3 → XP_017453790.1  small ribosomal subunit protein uS17m isoform X1

      UniProtKB/TrEMBL
      A6J0Q4, D3ZTR1
      Conserved Domains (1) summary
      pfam00366
      Location:15 → 83
      Ribosomal_S17; Ribosomal protein S17

    4. XM_039089223.2 → XP_038945151.1  small ribosomal subunit protein uS17m isoform X1

      UniProtKB/TrEMBL
      A6J0Q4, D3ZTR1
      Conserved Domains (1) summary
      pfam00366
      Location:15 → 83
      Ribosomal_S17; Ribosomal protein S17
    Nucleotide Protein Strain
    Heading Accession and Version

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