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    Ccdc7b coiled-coil domain containing 7B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497041, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc7bprovided by RGD
    Official Full Name
    coiled-coil domain containing 7Bprovided by RGD
    Primary source
    RGD:1359250
    See related
    EnsemblRapid:ENSRNOG00000050191 AllianceGenome:RGD:1359250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Biot2; Ccdc7
    Summary
    Orthologous to human CCDC7 (coiled-coil domain containing 7). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 712.9) See more
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    Genomic context

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    See Ccdc7b in Genome Data Viewer
    Location:
    19q12
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (74079539..74152823)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (57182480..57255764)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (61807661..62158361, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 7A Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134483667 Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 431-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. RNA interference against Biot2, a novel mouse testis-specific gene, inhibits the growth of tumor cells. Wang CT, et al. Cell Mol Biol Lett, 2009. PMID 19277478, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC93946

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 7
    Names
    coiled-coil domain containing 7
    coiled-coil domain-containing protein 7-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      74079539..74152823
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098125.2 → XP_038954053.1  coiled-coil domain-containing protein 7 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AWE1
      Conserved Domains (1) summary
      pfam15368
      Location:1 → 170
      BioT2; Spermatogenesis family BioT2

    2. XM_039098124.2 → XP_038954052.1  coiled-coil domain-containing protein 7 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A4F1, A0A8I6AWE1
      Related
      ENSRNOP00000081348.2, ENSRNOT00000120098.2
      Conserved Domains (1) summary
      pfam15368
      Location:1 → 177
      BioT2; Spermatogenesis family BioT2

    3. XM_039098123.2 → XP_038954051.1  coiled-coil domain-containing protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AWE1, M0R9L6, Q6AYJ6
      Related
      ENSRNOP00000066191.3, ENSRNOT00000075053.5
      Conserved Domains (1) summary
      pfam15368
      Location:1 → 177
      BioT2; Spermatogenesis family BioT2

    4. XM_039098126.2 → XP_038954054.1  coiled-coil domain-containing protein 7 isoform X4

      Conserved Domains (1) summary
      pfam15368
      Location:1 → 42
      BioT2; Spermatogenesis family BioT2

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001011561.1: Suppressed sequence

      Description
      NM_001011561.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CCDC7 (GeneID:79741).
    Nucleotide Protein Strain
    Heading Accession and Version

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