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    C5h1orf141 similar to human chromosome 1 open reading frame 141 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500513, updated on 4-Jan-2025

    Summary

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    Official Symbol
    C5h1orf141provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 141provided by RGD
    Primary source
    RGD:1562532
    See related
    EnsemblRapid:ENSRNOG00000022890 AllianceGenome:RGD:1562532
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562532
    Summary
    Orthologous to human C1orf141 (chromosome 1 open reading frame 141). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Restricted expression toward (RPKM 114.8) See more
    Orthologs
    human mouse all
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    Genomic context

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    See C5h1orf141 in Genome Data Viewer
    Location:
    5q33
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (123229915..123293570, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (118000865..118064520, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (122766889..122828398, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 4 Neighboring gene MIER1 transcriptional regulator Neighboring gene solute carrier family 35 member D1 Neighboring gene uncharacterized LOC134486958 Neighboring gene OMA1 zinc metallopeptidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    similar to human chromosome 1 open reading frame 141; uncharacterized protein C1orf141 homolog
    Names
    hypothetical gene supported by BC079057

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431220.1 → NP_001418149.1  similar to human chromosome 1 open reading frame 141 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      E9PT12, Q0VGK6

    2. NM_001431221.1 → NP_001418150.1  similar to human chromosome 1 open reading frame 141 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      E9PT12, Q0VGK6

    3. NM_001431222.1 → NP_001418151.1  similar to human chromosome 1 open reading frame 141 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I6GFR2

    4. NM_001431223.1 → NP_001418152.1  similar to human chromosome 1 open reading frame 141 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    5. NM_001431224.1 → NP_001418153.1  similar to human chromosome 1 open reading frame 141 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    6. NM_001431225.1 → NP_001418154.1  similar to human chromosome 1 open reading frame 141 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    7. NM_001431226.1 → NP_001418155.1  similar to human chromosome 1 open reading frame 141 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    8. NM_001431227.1 → NP_001418156.1  similar to human chromosome 1 open reading frame 141 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    RNA

    1. NR_197167.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    2. NR_197168.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    3. NR_197169.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    4. NR_197170.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    5. NR_197171.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    6. NR_197172.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      123229915..123293570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288586.1 → XP_063144656.1  uncharacterized protein C1orf141 homolog isoform X1

    2. XM_575875.9 → XP_575875.4  uncharacterized protein C1orf141 homolog isoform X1

      Related
      ENSRNOP00000035060.4, ENSRNOT00000030112.7
      Conserved Domains (1) summary
      pfam15078
      Location:1 → 441
      DUF4545; Domain of unknown function (DUF4545)

    3. XM_063288588.1 → XP_063144658.1  uncharacterized protein C1orf141 homolog isoform X3

    4. XM_063288590.1 → XP_063144660.1  uncharacterized protein C1orf141 homolog isoform X3

    5. XM_063288589.1 → XP_063144659.1  uncharacterized protein C1orf141 homolog isoform X3

    6. XM_063288587.1 → XP_063144657.1  uncharacterized protein C1orf141 homolog isoform X2

      Related
      ENSRNOP00000087159.1, ENSRNOT00000119912.2

    7. XM_039111124.2 → XP_038967052.1  uncharacterized protein C1orf141 homolog isoform X5

      Conserved Domains (1) summary
      pfam15078
      Location:1 → 132
      DUF4545; Domain of unknown function (DUF4545)

    8. XM_039111123.2 → XP_038967051.1  uncharacterized protein C1orf141 homolog isoform X4

      Conserved Domains (1) summary
      pfam15078
      Location:1 → 172
      DUF4545; Domain of unknown function (DUF4545)
    Nucleotide Protein Strain
    Heading Accession and Version

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