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    C9h2orf72 similar to human chromosome 2 open reading frame 72 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100362216, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C9h2orf72provided by RGD
    Official Full Name
    similar to human chromosome 2 open reading frame 72provided by RGD
    Primary source
    RGD:2318569
    See related
    EnsemblRapid:ENSRNOG00000017557 AllianceGenome:RGD:2318569
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C2orf72 (chromosome 2 open reading frame 72). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 207.8), Thymus (RPKM 23.6) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C9h2orf72 in Genome Data Viewer
    Location:
    9q35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (94139808..94147919)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (86691767..86699920)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (93061835..93070449)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094730 Neighboring gene signal recognition particle 14 like 1 Neighboring gene spermatogenesis associated 3 Neighboring gene uncharacterized LOC120094731 Neighboring gene uncharacterized LOC134480602 Neighboring gene proteasome 26S subunit, non-ATPase 1 Neighboring gene 5-hydroxytryptamine receptor 2B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    similar to human chromosome 2 open reading frame 72; uncharacterized protein C2orf72 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433405.1 → NP_001420334.1  similar to human chromosome 2 open reading frame 72 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      D4A6R4

    2. NM_001433406.1 → NP_001420335.1  similar to human chromosome 2 open reading frame 72 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      94139808..94147919
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006245499.4 → XP_006245561.1  uncharacterized protein C2orf72 homolog isoform X2

      Related
      ENSRNOP00000023592.3, ENSRNOT00000023592.5
      Conserved Domains (1) summary
      pfam15443
      Location:131 → 284
      DUF4630; Domain of unknown function (DUF4630)

    2. XM_002730053.7 → XP_002730099.1  uncharacterized protein C2orf72 homolog isoform X1

      Conserved Domains (1) summary
      pfam15443
      Location:131 → 285
      DUF4630; Domain of unknown function (DUF4630)
    Nucleotide Protein Strain
    Heading Accession and Version

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