Bmal1 basic helix-loop-helix ARNT like 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Bmal1provided by RGD
Official Full Name: basic helix-loop-helix ARNT like 1provided by RGD
Primary source: RGD:62003
See related: EnsemblRapid:ENSRNOG00000014448 AllianceGenome:RGD:62003
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Arntl
Summary: The protein encoded by this gene is a basic helix-loop-helix protein that forms a heterodimer with Clock. This heterodimer binds E-box enhancer elements upstream of Period (Per1, Per2, Per3) and Cryptochrome (Cry1, Cry2) genes and activates transcription of these genes. Per and Cry proteins heterodimerize and repress their own transcription by interacting in a feedback loop with Clock/Arntl complexes. Defects in this gene have been linked to infertility, problems with gluconeogenesis and lipogenesis, and altered sleep patterns. [provided by RefSeq, Jan 2014]
Expression: Biased expression in Thymus (RPKM 162.2), Liver (RPKM 123.4) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q33

Exon count:: 25

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (176766222..176864741)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (167331756..167430235)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (178039002..178137469)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

BMAL1 alleviates myocardial damage in sepsis by activating SIRT1 signaling and promoting mitochondrial autophagy.
Title: BMAL1 alleviates myocardial damage in sepsis by activating SIRT1 signaling and promoting mitochondrial autophagy.
Impact of circadian clock protein Bmal1 on experimentally-induced periodontitis-associated renal injury.
Title: Impact of circadian clock protein Bmal1 on experimentally-induced periodontitis-associated renal injury.
Sleep deprivation reduced LPS-induced IgG2b production by up-regulating BMAL1 and CLOCK expression.
Title: Sleep deprivation reduced LPS-induced IgG2b production by up-regulating BMAL1 and CLOCK expression.
BMAL1 involved in autophagy and injury of thoracic aortic endothelial cells of rats induced by intermittent heat stress through the AMPK/mTOR/ULK1 pathway.
Title: BMAL1 involved in autophagy and injury of thoracic aortic endothelial cells of rats induced by intermittent heat stress through the AMPK/mTOR/ULK1 pathway.
Bmal1 downregulation leads to diabetic cardiomyopathy by promoting Bcl2/IP3R-mediated mitochondrial Ca[2+] overload.
Title: Bmal1 downregulation leads to diabetic cardiomyopathy by promoting Bcl2/IP3R-mediated mitochondrial Ca(2+) overload.
Ziwuliuzhu Acupuncture Modulates Clock mRNA, Bmal1 mRNA and Melatonin in Insomnia Rats.
Title: Ziwuliuzhu Acupuncture Modulates Clock mRNA, Bmal1 mRNA and Melatonin in Insomnia Rats.
rs2253820 Variant Controls Blood Pressure Dip After Stroke by Increasing CLOCK-BMAL1 Expression.
Title: rs2253820 Variant Controls Blood Pressure Dip After Stroke by Increasing CLOCK-BMAL1 Expression.
BMAL1 Regulates Glucokinase Expression Through E-Box Elements In Vitro.
Title: BMAL1 Regulates Glucokinase Expression Through E-Box Elements In Vitro.
Circadian Rhythm Disorders Aggravate Periodontitis by Modulating BMAL1.
Title: Circadian Rhythm Disorders Aggravate Periodontitis by Modulating BMAL1.
[Role of brain and muscle ARNT-like protein 1 in the rat periodontitis-induced liver injury model].
Title: [Role of brain and muscle ARNT-like protein 1 in the rat periodontitis-induced liver injury model].

Submit: New GeneRIF Correction See all GeneRIFs (45)

General gene information

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Markers

Arntl (e-PCR), detects polymorphism
- UniSTS:545896

UniSTS:224416 (e-PCR)
- UniSTS:224416

BM387564 (e-PCR)
- UniSTS:261592

Arntl (e-PCR), detects polymorphism
- UniSTS:547569

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA binding	ISO Inferred from Sequence Orthology more info
enables DNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables DNA-binding transcription activator activity, RNA polymerase II-specific	ISO Inferred from Sequence Orthology more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	ISO Inferred from Sequence Orthology more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	ISO Inferred from Sequence Orthology more info
enables DNA-binding transcription factor binding	ISO Inferred from Sequence Orthology more info
enables E-box binding	IEA Inferred from Electronic Annotation more info
enables E-box binding	ISO Inferred from Sequence Orthology more info
enables E-box binding	ISS Inferred from Sequence or Structural Similarity more info
enables Hsp90 protein binding	IEA Inferred from Electronic Annotation more info
enables Hsp90 protein binding	ISO Inferred from Sequence Orthology more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	ISO Inferred from Sequence Orthology more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables aryl hydrocarbon receptor binding	IEA Inferred from Electronic Annotation more info
enables aryl hydrocarbon receptor binding	ISO Inferred from Sequence Orthology more info
enables bHLH transcription factor binding	ISO Inferred from Sequence Orthology more info
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info
enables protein heterodimerization activity	ISO Inferred from Sequence Orthology more info
enables sequence-specific DNA binding	ISO Inferred from Sequence Orthology more info
enables sequence-specific DNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables sequence-specific double-stranded DNA binding	ISO Inferred from Sequence Orthology more info
enables transcription cis-regulatory region binding	ISO Inferred from Sequence Orthology more info
enables transcription cis-regulatory region binding	ISS Inferred from Sequence or Structural Similarity more info
enables transcription coregulator activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within autophagy	ISO Inferred from Sequence Orthology more info
involved_in circadian regulation of gene expression	IEA Inferred from Electronic Annotation more info
involved_in circadian regulation of gene expression	ISO Inferred from Sequence Orthology more info
involved_in circadian regulation of gene expression	ISS Inferred from Sequence or Structural Similarity more info
involved_in circadian rhythm	IBA Inferred from Biological aspect of Ancestor more info
involved_in circadian rhythm	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within circadian rhythm	ISO Inferred from Sequence Orthology more info
involved_in circadian rhythm	ISO Inferred from Sequence Orthology more info
involved_in energy homeostasis	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within gene expression	ISO Inferred from Sequence Orthology more info
involved_in maternal process involved in parturition	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of DNA-templated transcription	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of DNA-templated transcription	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of TOR signaling	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of TOR signaling	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of cold-induced thermogenesis	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of cold-induced thermogenesis	ISS Inferred from Sequence or Structural Similarity more info	PubMed
involved_in negative regulation of fat cell differentiation	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of fat cell differentiation	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of glucocorticoid receptor signaling pathway	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of glucocorticoid receptor signaling pathway	ISS Inferred from Sequence or Structural Similarity more info
involved_in oxidative stress-induced premature senescence	ISO Inferred from Sequence Orthology more info
involved_in oxidative stress-induced premature senescence	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of DNA-templated transcription	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of DNA-templated transcription	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of DNA-templated transcription	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of canonical Wnt signaling pathway	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of canonical Wnt signaling pathway	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of circadian rhythm	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of circadian rhythm	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of circadian rhythm	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of protein acetylation	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of protein acetylation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of protein acetylation	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of skeletal muscle cell differentiation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of skeletal muscle cell differentiation	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	ISO Inferred from Sequence Orthology more info
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein import into nucleus	ISO Inferred from Sequence Orthology more info
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	ISO Inferred from Sequence Orthology more info
involved_in regulation of DNA-templated transcription	ISO Inferred from Sequence Orthology more info
involved_in regulation of DNA-templated transcription	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of cell cycle	ISO Inferred from Sequence Orthology more info
involved_in regulation of cell cycle	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of cellular senescence	ISO Inferred from Sequence Orthology more info
involved_in regulation of cellular senescence	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of hair cycle	IEA Inferred from Electronic Annotation more info
involved_in regulation of hair cycle	ISO Inferred from Sequence Orthology more info
involved_in regulation of hair cycle	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of insulin secretion	ISO Inferred from Sequence Orthology more info
involved_in regulation of insulin secretion	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of neurogenesis	ISO Inferred from Sequence Orthology more info
involved_in regulation of neurogenesis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of protein catabolic process	ISO Inferred from Sequence Orthology more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of type B pancreatic cell development	ISO Inferred from Sequence Orthology more info
involved_in regulation of type B pancreatic cell development	ISS Inferred from Sequence or Structural Similarity more info
involved_in response to redox state	IEA Inferred from Electronic Annotation more info
involved_in response to redox state	ISO Inferred from Sequence Orthology more info
involved_in response to redox state	ISS Inferred from Sequence or Structural Similarity more info
involved_in rhythmic process	IEA Inferred from Electronic Annotation more info
involved_in spermatogenesis	ISO Inferred from Sequence Orthology more info
involved_in spermatogenesis	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
part_of CLOCK-BMAL transcription complex	IEA Inferred from Electronic Annotation more info
part_of CLOCK-BMAL transcription complex	ISO Inferred from Sequence Orthology more info
located_in PML body	IEA Inferred from Electronic Annotation more info
part_of aryl hydrocarbon receptor complex	IBA Inferred from Biological aspect of Ancestor more info
located_in chromatoid body	ISO Inferred from Sequence Orthology more info
located_in chromatoid body	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in intracellular membrane-bounded organelle	ISO Inferred from Sequence Orthology more info
located_in nuclear body	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
part_of transcription regulator complex	IEA Inferred from Electronic Annotation more info
part_of transcription regulator complex	ISO Inferred from Sequence Orthology more info
part_of transcription regulator complex	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: basic helix-loop-helix ARNT-like protein 1

Names: aryl hydrocarbon receptor nuclear translocator-like protein 1; brain and muscle ARNT-like 1; tic

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_024362.2 → NP_077338.2 basic helix-loop-helix ARNT-like protein 1

See identical proteins and their annotated locations for NP_077338.2

Status: VALIDATED

Source sequence(s)

BC099833

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A6I877, D3ZT62

Conserved Domains (3) summary

smart00091
Location:149 → 208

PAS; PAS domain

cd11438
Location:67 → 130

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:339 → 441

PAS_11; PAS domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

176766222..176864741

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006230029.5 → XP_006230091.1 basic helix-loop-helix ARNT-like protein 1 isoform X3

See identical proteins and their annotated locations for XP_006230091.1

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A6I877, D3ZT62

Related

ENSRNOP00000042830.3, ENSRNOT00000046313.6

Conserved Domains (3) summary

smart00091
Location:149 → 208

PAS; PAS domain

cd11438
Location:67 → 130

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:339 → 441

PAS_11; PAS domain
XM_017589065.3 → XP_017444554.1 basic helix-loop-helix ARNT-like protein 1 isoform X1

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A0A8I5ZXD2, A6I875

Conserved Domains (3) summary

smart00091
Location:156 → 215

PAS; PAS domain

cd11438
Location:74 → 137

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:346 → 448

PAS_11; PAS domain
XM_017589068.3 → XP_017444557.1 basic helix-loop-helix ARNT-like protein 1 isoform X2

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

Conserved Domains (3) summary

smart00091
Location:156 → 215

PAS; PAS domain

cd11438
Location:74 → 137

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:345 → 447

PAS_11; PAS domain
XM_006230030.5 → XP_006230092.1 basic helix-loop-helix ARNT-like protein 1 isoform X4

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

Conserved Domains (3) summary

smart00091
Location:149 → 208

PAS; PAS domain

cd11438
Location:67 → 130

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:338 → 440

PAS_11; PAS domain
XM_039109748.2 → XP_038965676.1 basic helix-loop-helix ARNT-like protein 1 isoform X1

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A0A8I5ZXD2, A6I875

Conserved Domains (3) summary

smart00091
Location:156 → 215

PAS; PAS domain

cd11438
Location:74 → 137

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:346 → 448

PAS_11; PAS domain
XM_063287814.1 → XP_063143884.1 basic helix-loop-helix ARNT-like protein 1 isoform X3

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A6I877, D3ZT62
XM_017589067.3 → XP_017444556.1 basic helix-loop-helix ARNT-like protein 1 isoform X1

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A0A8I5ZXD2, A6I875

Conserved Domains (3) summary

smart00091
Location:156 → 215

PAS; PAS domain

cd11438
Location:74 → 137

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:346 → 448

PAS_11; PAS domain
XM_039109755.2 → XP_038965683.1 basic helix-loop-helix ARNT-like protein 1 isoform X1

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A0A8I5ZXD2, A6I875

Conserved Domains (3) summary

smart00091
Location:156 → 215

PAS; PAS domain

cd11438
Location:74 → 137

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:346 → 448

PAS_11; PAS domain
XM_063287804.1 → XP_063143874.1 basic helix-loop-helix ARNT-like protein 1 isoform X3

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A6I877, D3ZT62
XM_063287791.1 → XP_063143861.1 basic helix-loop-helix ARNT-like protein 1 isoform X1

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A0A8I5ZXD2, A6I875

Related

ENSRNOP00000082167.1, ENSRNOT00000095012.2
XM_017589070.3 → XP_017444559.1 basic helix-loop-helix ARNT-like protein 1 isoform X6

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

UniProtKB/TrEMBL

A0A8I6A2N7

Related

ENSRNOP00000087129.1, ENSRNOT00000097013.2

Conserved Domains (3) summary

smart00091
Location:106 → 165

PAS; PAS domain

cd11438
Location:24 → 87

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:296 → 398

PAS_11; PAS domain
XM_039109788.2 → XP_038965716.1 basic helix-loop-helix ARNT-like protein 1 isoform X7

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

Conserved Domains (3) summary

smart00091
Location:106 → 165

PAS; PAS domain

cd11438
Location:24 → 87

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:295 → 397

PAS_11; PAS domain
XM_039109778.1 → XP_038965706.1 basic helix-loop-helix ARNT-like protein 1 isoform X5

UniProtKB/Swiss-Prot

O88337, O88810, Q499M8, Q9EPW1

Conserved Domains (3) summary

smart00091
Location:132 → 191

PAS; PAS domain

cd11438
Location:50 → 113

bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

pfam14598
Location:322 → 424

PAS_11; PAS domain