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    Nol9 nucleolar protein 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313744, updated on 9-Dec-2024

    Summary

    Official Symbol
    Nol9provided by RGD
    Official Full Name
    nucleolar protein 9provided by RGD
    Primary source
    RGD:1566167
    See related
    EnsemblRapid:ENSRNOG00000010109 AllianceGenome:RGD:1566167
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity. Predicted to be involved in cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in intermediate filament cytoskeleton and nucleolus. Predicted to be active in nucleus. Orthologous to human NOL9 (nucleolar protein 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 67.7), Spleen (RPKM 66.4) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Nol9 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (167829249..167849364)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (162546522..162566625)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (169213076..169233173)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 48 Neighboring gene taste 1 receptor member 1 Neighboring gene pleckstrin homology and RhoGEF domain containing G5 Neighboring gene TNF receptor superfamily member 25

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in intermediate filament cytoskeleton  
    located_in intermediate filament cytoskeleton  
    located_in nucleolus  
    located_in nucleolus  
    is_active_in nucleus  

    General protein information

    Preferred Names
    polynucleotide 5'-hydroxyl-kinase NOL9
    NP_001386164.1
    XP_038967289.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399235.1NP_001386164.1  polynucleotide 5'-hydroxyl-kinase NOL9

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6IUG5, G3V7B0
      Conserved Domains (1) summary
      pfam16575
      Location:322482
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      167829249..167849364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111361.2XP_038967289.1  polynucleotide 5'-hydroxyl-kinase NOL9 isoform X1

      UniProtKB/TrEMBL
      A0A8I5YBW7, G3V7B0
      Related
      ENSRNOP00000076785.1, ENSRNOT00000112748.2
      Conserved Domains (1) summary
      pfam16575
      Location:323483
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    RNA

    1. XR_005505136.2 RNA Sequence

    2. XR_005505135.2 RNA Sequence

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