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    Lcn9 lipocalin 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296578, updated on 27-Dec-2024

    Summary

    Official Symbol
    Lcn9provided by RGD
    Official Full Name
    lipocalin 9provided by RGD
    Primary source
    RGD:1306341
    See related
    EnsemblRapid:ENSRNOG00000027821 AllianceGenome:RGD:1306341
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306341
    Summary
    Predicted to enable small molecule binding activity. Orthologous to human LCN9 (lipocalin 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 5.0), Kidney (RPKM 0.6) and 2 other tissues See more
    Orthologs
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    Genomic context

    See Lcn9 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (29041710..29050677)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8644427..8646782)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (3272150..3274792)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene lipocalin-15 like 1 Neighboring gene glycosyltransferase 6 domain containing 1 Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 1 Neighboring gene potassium sodium-activated channel subfamily T member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    epididymal-specific lipocalin-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106560.1 → NP_001100030.1  epididymal-specific lipocalin-9 precursor

      See identical proteins and their annotated locations for NP_001100030.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474001
      UniProtKB/TrEMBL
      A6JTB1, B3EY87, F7FKU6
      Related
      ENSRNOP00000047057.2, ENSRNOT00000044284.4
      Conserved Domains (1) summary
      pfam00061
      Location:35 → 175
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      29041710..29050677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283465.1 → XP_063139535.1  epididymal-specific lipocalin-9 isoform X1

    2. XM_063283466.1 → XP_063139536.1  epididymal-specific lipocalin-9 isoform X2

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