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    Tssk5 testis-specific serine kinase 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315095, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tssk5provided by RGD
    Official Full Name
    testis-specific serine kinase 5provided by RGD
    Primary source
    RGD:1308613
    See related
    EnsemblRapid:ENSRNOG00000013753 AllianceGenome:RGD:1308613
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308613
    Summary
    Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 13.5), Thymus (RPKM 4.7) and 9 other tissues See more
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    Genomic context

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    See Tssk5 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (109975487..109983215, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (108094836..108102557, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (117437304..117440342, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 97 Neighboring gene HGH1 homolog Neighboring gene maestro heat-like repeat family member 1 Neighboring gene U6 spliceosomal RNA Neighboring gene BOP1 ribosomal biogenesis factor Neighboring gene scleraxis bHLH transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC105906

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    testis-specific serine/threonine-protein kinase 5
    Names
    testis-specific serine/threonine kinase
    NP_001014108.2
    XP_038935173.1
    XP_038935174.1
    XP_038935175.1
    XP_038935176.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014086.2 → NP_001014108.2  testis-specific serine/threonine-protein kinase 5

      See identical proteins and their annotated locations for NP_001014108.2

      Status: PROVISIONAL

      Source sequence(s)
      CH473950
      UniProtKB/TrEMBL
      A6HS96, D3ZJ84
      Related
      ENSRNOP00000018528.4, ENSRNOT00000018528.7
      Conserved Domains (2) summary
      smart00220
      Location:31 → 302
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:26 → 301
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      109975487..109983215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079246.2 → XP_038935174.1  testis-specific serine/threonine-protein kinase 5 isoform X1

      Conserved Domains (1) summary
      cl21453
      Location:7 → 226
      PKc_like; Protein Kinases, catalytic domain

    2. XM_039079245.2 → XP_038935173.1  testis-specific serine/threonine-protein kinase 5 isoform X1

      Conserved Domains (1) summary
      cl21453
      Location:7 → 226
      PKc_like; Protein Kinases, catalytic domain

    3. XM_039079248.2 → XP_038935176.1  testis-specific serine/threonine-protein kinase 5 isoform X2

      Conserved Domains (1) summary
      cl21453
      Location:25 → 237
      PKc_like; Protein Kinases, catalytic domain

    4. XM_039079247.2 → XP_038935175.1  testis-specific serine/threonine-protein kinase 5 isoform X2

      Conserved Domains (1) summary
      cl21453
      Location:25 → 237
      PKc_like; Protein Kinases, catalytic domain

    RNA

    1. XR_005486641.2 RNA Sequence

    2. XR_010052976.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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