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    Itprid1 ITPR interacting domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500139, updated on 9-Dec-2024

    Summary

    Official Symbol
    Itprid1provided by RGD
    Official Full Name
    ITPR interacting domain containing 1provided by RGD
    Primary source
    RGD:1561131
    See related
    EnsemblRapid:ENSRNOG00000012165 AllianceGenome:RGD:1561131
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ccdc129; RGD1561131
    Summary
    Predicted to enable signaling receptor binding activity. Orthologous to human ITPRID1 (ITPR interacting domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 23.9), Thymus (RPKM 4.5) and 1 other tissue See more
    Orthologs
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    Genomic context

    See Itprid1 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (86345467..86505820)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (85015264..85172457)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (86080412..86233808)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene ADCYAP receptor type I Neighboring gene neuronal differentiation 6 Neighboring gene protein phosphatase 1, regulatory subunit 17 Neighboring gene uncharacterized LOC134486774

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein ITPRID1
    Names
    coiled-coil domain containing 129
    coiled-coil domain-containing protein 129

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191973.1NP_001178902.1  protein ITPRID1

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A0G2JVP6
      Conserved Domains (2) summary
      pfam14722
      Location:114256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
      pfam14723
      Location:823908
      SSFA2_C; Sperm-specific antigen 2 C-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      86345467..86505820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008762911.4XP_008761133.1  protein ITPRID1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JVP6, A0A8I6ASI7
      Conserved Domains (2) summary
      pfam14722
      Location:114256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
      pfam14723
      Location:823908
      SSFA2_C; Sperm-specific antigen 2 C-terminus
    2. XM_017592798.3XP_017448287.1  protein ITPRID1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JVP6
      Related
      ENSRNOP00000094916.2, ENSRNOT00000112978.2
      Conserved Domains (2) summary
      pfam14722
      Location:114256
      KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
      pfam14723
      Location:823908
      SSFA2_C; Sperm-specific antigen 2 C-terminus
    3. XM_017592799.3XP_017448288.1  protein ITPRID1 isoform X3

      UniProtKB/TrEMBL
      D3ZPH2
      Related
      ENSRNOP00000046662.5, ENSRNOT00000045930.7
    4. XM_017592800.3XP_017448289.1  protein ITPRID1 isoform X3

      UniProtKB/TrEMBL
      D3ZPH2
    5. XM_063286516.1XP_063142586.1  protein ITPRID1 isoform X3

      UniProtKB/TrEMBL
      D3ZPH2