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    Fndc7 fibronectin type III domain containing 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310787, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fndc7provided by RGD
    Official Full Name
    fibronectin type III domain containing 7provided by RGD
    Primary source
    RGD:1309189
    See related
    EnsemblRapid:ENSRNOG00000020421 AllianceGenome:RGD:1309189
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309189
    Summary
    Orthologous to human FNDC7 (fibronectin type III domain containing 7). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Uterus (RPKM 23.1), Lung (RPKM 18.5) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fndc7 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (199189029..199226425, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (196501313..196537816, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (211655482..211690802, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene AKNA domain containing 1 Neighboring gene uncharacterized LOC102547393 Neighboring gene syntaxin binding protein 3 Neighboring gene uncharacterized LOC134485674 Neighboring gene microRNA 6314 Neighboring gene pre-mRNA processing factor 38B Neighboring gene HEN methyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    fibronectin type III domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107717.2 → NP_001101187.1  fibronectin type III domain-containing protein 7 precursor

      See identical proteins and their annotated locations for NP_001101187.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6AG81, A6HV32, D3ZJV4
      Related
      ENSRNOP00000027690.5, ENSRNOT00000027690.7
      Conserved Domains (3) summary
      smart00060
      Location:115 → 188
      FN3; Fibronectin type 3 domain
      cd00063
      Location:201 → 285
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:28 → 105
      fn3; Fibronectin type III domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      199189029..199226425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006233159.5 → XP_006233221.1  fibronectin type III domain-containing protein 7 isoform X1

      See identical proteins and their annotated locations for XP_006233221.1

      UniProtKB/TrEMBL
      A0A8I6AG81, A6HV32, D3ZJV4
      Conserved Domains (3) summary
      smart00060
      Location:115 → 188
      FN3; Fibronectin type 3 domain
      cd00063
      Location:201 → 285
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:28 → 105
      fn3; Fibronectin type III domain
    Nucleotide Protein Strain
    Heading Accession and Version

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