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    Dnajc5b DnaJ heat shock protein family (Hsp40) member C5 beta [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499579, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Dnajc5bprovided by RGD
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C5 betaprovided by RGD
    Primary source
    RGD:1562486
    See related
    EnsemblRapid:ENSRNOG00000012851 AllianceGenome:RGD:1562486
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562486
    Summary
    Predicted to be located in cytoplasm and membrane. Orthologous to human DNAJC5B (DnaJ heat shock protein family (Hsp40) member C5 beta). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 553.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Dnajc5b in Genome Data Viewer
    Location:
    2q24
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (103889863..103982413)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (101973726..102066275)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (104290726..104382846)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103691515 Neighboring gene ribosomal protein L13, pseudogene 12 Neighboring gene RGD1562890 Neighboring gene transfer RNA arginine (anticodon ACG) 1 Neighboring gene transfer RNA tyrosine (anticodon GUA) 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dnaJ homolog subfamily C member 5B
    Names
    CSP-beta
    DnaJ (Hsp40) homolog, subfamily C, member 5 beta
    cysteine string protein beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109180.1 → NP_001102650.1  dnaJ homolog subfamily C member 5B

      See identical proteins and their annotated locations for NP_001102650.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473961
      UniProtKB/Swiss-Prot
      D3ZD82
      Conserved Domains (1) summary
      COG0484
      Location:19 → 88
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      103889863..103982413
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017591027.3 → XP_017446516.1  dnaJ homolog subfamily C member 5B isoform X1

      UniProtKB/Swiss-Prot
      D3ZD82
      Conserved Domains (1) summary
      COG0484
      Location:19 → 88
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

    2. XM_063282353.1 → XP_063138423.1  dnaJ homolog subfamily C member 5B isoform X1

      UniProtKB/Swiss-Prot
      D3ZD82
      Related
      ENSRNOP00000017387.3, ENSRNOT00000017387.7

    3. XM_017591029.3 → XP_017446518.1  dnaJ homolog subfamily C member 5B isoform X1

      UniProtKB/Swiss-Prot
      D3ZD82
      Conserved Domains (1) summary
      COG0484
      Location:19 → 88
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D3ZD82.1 GenPept UniProtKB/Swiss-Prot:D3ZD82

    Gene LinkOut

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