U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Polr3gl RNA polymerase III subunit GL [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690254, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Polr3glprovided by RGD
    Official Full Name
    RNA polymerase III subunit GLprovided by RGD
    Primary source
    RGD:1582857
    See related
    EnsemblRapid:ENSRNOG00000021209 AllianceGenome:RGD:1582857
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable chromatin binding activity. Predicted to be involved in transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3GL (RNA polymerase III subunit GL). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 12.2), Liver (RPKM 12.1) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Polr3gl in Genome Data Viewer
    Location:
    2q34
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (186800419..186818048, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (184111570..184129200, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (198698044..198719609, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103691645 Neighboring gene thioredoxin interacting protein Neighboring gene ankyrin repeat domain 34A Neighboring gene limb and CNS expressed 1 like Neighboring gene high mobility group protein B1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Two isoforms of human RNA polymerase III with specific functions in cell growth and transformation. Haurie V, et al. Proc Natl Acad Sci U S A, 2010 Mar 2. PMID 20154270, Free PMC Article
    2. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, et al. Cell Cycle, 2010 Sep 15. PMID 20890107, Free PMC Article
    3. Gene duplication and neofunctionalization: POLR3G and POLR3GL. Renaud M, et al. Genome Res, 2014 Jan. PMID 24107381, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables chromatin binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase III ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase III complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-directed RNA polymerase III subunit RPC7-like
    Names
    RNA polymerase III subunit G like
    polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like
    polymerase (RNA) III (DNA directed) polypeptide G-like
    polymerase (RNA) III subunit G like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109571.1 → NP_001103041.1  DNA-directed RNA polymerase III subunit RPC7-like

      See identical proteins and their annotated locations for NP_001103041.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474015
      UniProtKB/TrEMBL
      A6K376, B4F7D3, F7FA39
      Related
      ENSRNOP00000028801.2, ENSRNOT00000028801.6
      Conserved Domains (1) summary
      pfam11705
      Location:17 → 204
      RNA_pol_3_Rpc31; DNA-directed RNA polymerase III subunit Rpc31

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      186800419..186818048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008761331.3 → XP_008759553.1  DNA-directed RNA polymerase III subunit RPC7-like isoform X1

      Related
      ENSRNOP00000106162.1, ENSRNOT00000154141.1
      Conserved Domains (1) summary
      pfam11705
      Location:16 → 172
      RNA_pol_3_Rpc31; DNA-directed RNA polymerase III subunit Rpc31

    2. XM_063282587.1 → XP_063138657.1  DNA-directed RNA polymerase III subunit RPC7-like isoform X2

      Related
      ENSRNOP00000109633.1, ENSRNOT00000174059.1

    3. XM_039103161.1 → XP_038959089.1  DNA-directed RNA polymerase III subunit RPC7-like isoform X3

    4. XM_063282588.1 → XP_063138658.1  DNA-directed RNA polymerase III subunit RPC7-like isoform X4

    5. XM_063282589.1 → XP_063138659.1  DNA-directed RNA polymerase III subunit RPC7-like isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous