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    Fbrsl1 fibrosin-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304572, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fbrsl1provided by RGD
    Official Full Name
    fibrosin-like 1provided by RGD
    Primary source
    RGD:1563342
    See related
    EnsemblRapid:ENSRNOG00000083453 AllianceGenome:RGD:1563342
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563342
    Summary
    Orthologous to human FBRSL1 (fibrosin like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 39.1), Kidney (RPKM 29.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fbrsl1 in Genome Data Viewer
    Location:
    12q16
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (51891211..51979715)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (46231466..46320607)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (52289979..52378726)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene uncharacterized LOC134481339 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene leucine rich colipase-like 1 Neighboring gene purinergic receptor P2X 2 Neighboring gene DNA polymerase epsilon, catalytic subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    fibrosin-1-like protein; fibrosin-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431786.1 → NP_001418715.1  fibrosin-like 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      D3Z858, M0RAC7

    2. NM_001431787.1 → NP_001418716.1  fibrosin-like 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A0A8I6A5A6

    3. NM_001431788.1 → NP_001418717.1  fibrosin-like 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012

    4. NM_001431789.1 → NP_001418718.1  fibrosin-like 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012

    5. NM_001431790.1 → NP_001418719.1  fibrosin-like 1 isoform 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      51891211..51979715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017598567.3 → XP_017454056.1  fibrosin-1-like protein isoform X11

      Related
      ENSRNOP00000086163.1, ENSRNOT00000098513.2

    2. XM_017598560.3 → XP_017454049.1  fibrosin-1-like protein isoform X2

      UniProtKB/TrEMBL
      D3Z858

    3. XM_006249591.5 → XP_006249653.1  fibrosin-1-like protein isoform X8

      UniProtKB/TrEMBL
      A0A8I6A2S4
      Conserved Domains (1) summary
      pfam15336
      Location:523 → 726
      Auts2; Autism susceptibility gene 2 protein

    4. XM_222254.11 → XP_222254.5  fibrosin-1-like protein isoform X1

      UniProtKB/TrEMBL
      D3Z858, F1M3A0
      Conserved Domains (1) summary
      pfam15336
      Location:568 → 771
      Auts2; Autism susceptibility gene 2 protein

    5. XM_017598563.3 → XP_017454052.1  fibrosin-1-like protein isoform X5

      UniProtKB/TrEMBL
      D3Z858

    6. XM_006249592.5 → XP_006249654.1  fibrosin-1-like protein isoform X9

      UniProtKB/TrEMBL
      D3Z858
      Conserved Domains (1) summary
      pfam15336
      Location:545 → 724
      Auts2; Autism susceptibility gene 2 protein

    7. XM_063271804.1 → XP_063127874.1  fibrosin-1-like protein isoform X7

      UniProtKB/TrEMBL
      D3Z858

    8. XM_006249589.5 → XP_006249651.1  fibrosin-1-like protein isoform X4

      UniProtKB/TrEMBL
      D3Z858
      Conserved Domains (1) summary
      pfam15336
      Location:545 → 748
      Auts2; Autism susceptibility gene 2 protein

    9. XM_017598561.3 → XP_017454050.1  fibrosin-1-like protein isoform X3

      UniProtKB/TrEMBL
      D3Z858

    10. XM_063271803.1 → XP_063127873.1  fibrosin-1-like protein isoform X6

    11. XM_063271805.1 → XP_063127875.1  fibrosin-1-like protein isoform X10

      UniProtKB/TrEMBL
      A6J2A4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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