Sbspon somatomedin B and thrombospondin, type 1 domain containing [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Sbsponprovided by RGD
Official Full Name: somatomedin B and thrombospondin, type 1 domain containingprovided by RGD
Primary source: RGD:1559717
See related: EnsemblRapid:ENSRNOG00000007258 AllianceGenome:RGD:1559717
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Rpesp; RGD1559717
Summary: Orthologous to human SBSPON (somatomedin B and thrombospondin type 1 domain containing). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Kidney (RPKM 129.5), Uterus (RPKM 20.3) and 4 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 5q11

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (8186004..8216576)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (3402763..3433338)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (2813004..2847697)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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General protein information

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Preferred Names: somatomedin-B and thrombospondin type-1 domain-containing protein

Names: RPE-spondin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001399482.1 → NP_001386411.1 somatomedin-B and thrombospondin type-1 domain-containing protein precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000005

UniProtKB/TrEMBL

A6JFC0, D3ZS55

Related

ENSRNOP00000009530.4, ENSRNOT00000009530.9

Conserved Domains (1) summary

pfam19028
Location:75 → 121

TSP1_spondin; Spondin-like TSP1 domain