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    Itfg1 integrin alpha FG-GAP repeat containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 171083, updated on 9-Dec-2024

    Summary

    Symbol
    Itfg1provided by RGD
    Full Name
    integrin alpha FG-GAP repeat containing 1provided by RGD
    Primary source
    RGD:619898
    See related
    EnsemblRapid:ENSRNOG00000015843 AllianceGenome:RGD:619898
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cda08
    Summary
    Predicted to be located in extracellular region and membrane. Predicted to be active in plasma membrane. Orthologous to human ITFG1 (integrin alpha FG-GAP repeat containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 672.8), Kidney (RPKM 438.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Itfg1 in Genome Data Viewer
    Location:
    19p11
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (37383982..37504523)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (21210697..21331285)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (22281906..22403548)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene phosphorylase kinase regulatory subunit beta Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134483303 Neighboring gene neuropilin and tolloid like 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member A2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC93216

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in extracellular region  
    located_in membrane  
    is_active_in plasma membrane  

    General protein information

    Preferred Names
    T-cell immunomodulatory protein
    Names
    CDA08-like protein
    hypothetical protein CDA08
    integrin-alpha FG-GAP repeat-containing protein 1
    linkin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133557.2NP_598241.2  T-cell immunomodulatory protein precursor

      See identical proteins and their annotated locations for NP_598241.2

      Status: PROVISIONAL

      Source sequence(s)
      BC085706
      UniProtKB/Swiss-Prot
      Q8R4E1
      UniProtKB/TrEMBL
      A6KDC8, F7FNV8, Q5U355
      Related
      ENSRNOP00000021711.4, ENSRNOT00000021711.7
      Conserved Domains (1) summary
      pfam13517
      Location:54117
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      37383982..37504523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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