U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Ccdc112 coiled-coil domain containing 112 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498858, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc112provided by RGD
    Official Full Name
    coiled-coil domain containing 112provided by RGD
    Primary source
    RGD:1561942
    See related
    EnsemblRapid:ENSRNOG00000003559 AllianceGenome:RGD:1561942
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561942
    Summary
    Predicted to be located in centriolar satellite. Orthologous to human CCDC112 (coiled-coil domain containing 112). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 21.0), Brain (RPKM 20.0) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ccdc112 in Genome Data Viewer
    Location:
    18q11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (41184769..41218958, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (38998139..39032329, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (40220855..40254845, complement)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing 36 Neighboring gene uncharacterized LOC120098337 Neighboring gene protein geranylgeranyltransferase type I subunit beta Neighboring gene uncharacterized LOC134483014 Neighboring gene U6 spliceosomal RNA Neighboring gene motile sperm domain containing 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in centriolar satellite  

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 112

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109124.1NP_001102594.1  coiled-coil domain-containing protein 112 precursor

      See identical proteins and their annotated locations for NP_001102594.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473971
      UniProtKB/TrEMBL
      A6IWV3, D4A095
      Related
      ENSRNOP00000004742.3, ENSRNOT00000004742.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      41184769..41218958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Loading
    External link. Please review our privacy policy.