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    Bean1 brain expressed, associated with NEDD4, 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361358, updated on 9-Dec-2024

    Summary

    Symbol
    Bean1provided by RGD
    Full Name
    brain expressed, associated with NEDD4, 1provided by RGD
    Primary source
    RGD:1562003
    See related
    EnsemblRapid:ENSRNOG00000066314 AllianceGenome:RGD:1562003
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Bean; RGD1562003
    Summary
    Predicted to be located in membrane. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 31. Orthologous to human BEAN1 (brain expressed associated with NEDD4 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 97.7), Adrenal (RPKM 38.1) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Bean1 in Genome Data Viewer
    Location:
    19p14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (745993..792853, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (739551..786395, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (947862..993467, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S20, pseudogene 7 Neighboring gene thymidine kinase 2 Neighboring gene cadherin 5 Neighboring gene uncharacterized LOC102556295

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001400978.1NP_001387907.1  protein BEAN1 isoform 1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A0A8I5ZYA5
      Related
      ENSRNOP00000110676.1, ENSRNOT00000169800.1
    2. NM_001434578.1NP_001421507.1  protein BEAN1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A0A8I5ZYA5, A0A8I6GBJ0

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      745993..792853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098230.2XP_038954158.2  protein BEAN1 isoform X1

      Related
      ENSRNOP00000083124.2, ENSRNOT00000112028.2
    2. XM_039098227.2XP_038954155.1  protein BEAN1 isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZYA5
    3. XM_008772259.4XP_008770481.1  protein BEAN1 isoform X1

      See identical proteins and their annotated locations for XP_008770481.1

      UniProtKB/TrEMBL
      A0A8I5ZYA5, A0A8I6GBJ0
      Related
      ENSRNOP00000085069.1, ENSRNOT00000095190.2
    4. XM_039098229.2XP_038954157.1  protein BEAN1 isoform X3

      UniProtKB/TrEMBL
      A6JXX1
    5. XM_039098228.2XP_038954156.1  protein BEAN1 isoform X3

      UniProtKB/TrEMBL
      A6JXX1
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