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    Relt RELT, TNF receptor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361615, updated on 9-Dec-2024

    Summary

    Official Symbol
    Reltprovided by RGD
    Official Full Name
    RELT, TNF receptorprovided by RGD
    Primary source
    RGD:1305381
    See related
    EnsemblRapid:ENSRNOG00000025075 AllianceGenome:RGD:1305381
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tnfrsf19l
    Summary
    Predicted to be involved in amelogenesis and apoptotic process. Predicted to be located in nucleoplasm. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 3C. Orthologous to human RELT (RELT TNF receptor). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 34.4), Muscle (RPKM 27.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Relt in Genome Data Viewer
    Location:
    1q32
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (164619059..164636707, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (155206976..155224609, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (165884407..165902022, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene RAB6A, member RAS oncogene family Neighboring gene pleckstrin homology domain containing B1 Neighboring gene family with sequence similarity 168, member A Neighboring gene Rho guanine nucleotide exchange factor 17 Neighboring gene microRNA 3102 Neighboring gene pyrimidinergic receptor P2Y6

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in amelogenesis  
    involved_in amelogenesis  
    involved_in apoptotic process  
    involved_in apoptotic process  
    Component Evidence Code Pubs
    located_in nucleoplasm  
    located_in nucleoplasm  
    located_in plasma membrane  

    General protein information

    Preferred Names
    tumor necrosis factor receptor superfamily member 19L
    Names
    RELT tumor necrosis factor receptor
    tumor necrosis factor receptor superfamily, member 19-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108495.1 → NP_001101965.1  tumor necrosis factor receptor superfamily member 19L precursor

      See identical proteins and their annotated locations for NP_001101965.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473956
      UniProtKB/TrEMBL
      A6I6R8, F1LVW5
      Related
      ENSRNOP00000036110.6, ENSRNOT00000038408.8
      Conserved Domains (2) summary
      cd13419
      Location:26 → 112
      TNFRSF19L; tumor necrosis factor receptor superfamily member 19-like (TNFRSF19L), also known as receptor expressed in lymphoid tissues (RELT)
      pfam12606
      Location:161 → 196
      RELT; tumor necrosis factor receptor superfamily member 19

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      164619059..164636707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039082537.2 → XP_038938465.1  tumor necrosis factor receptor superfamily member 19L isoform X2

      UniProtKB/TrEMBL
      A6I6R8, F1LVW5
      Conserved Domains (2) summary
      cd13419
      Location:26 → 112
      TNFRSF19L; tumor necrosis factor receptor superfamily member 19-like (TNFRSF19L), also known as receptor expressed in lymphoid tissues (RELT)
      pfam12606
      Location:161 → 196
      RELT; tumor necrosis factor receptor superfamily member 19
    2. XM_006229777.5 → XP_006229839.1  tumor necrosis factor receptor superfamily member 19L isoform X2

      See identical proteins and their annotated locations for XP_006229839.1

      UniProtKB/TrEMBL
      A6I6R8, F1LVW5
      Conserved Domains (2) summary
      cd13419
      Location:26 → 112
      TNFRSF19L; tumor necrosis factor receptor superfamily member 19-like (TNFRSF19L), also known as receptor expressed in lymphoid tissues (RELT)
      pfam12606
      Location:161 → 196
      RELT; tumor necrosis factor receptor superfamily member 19
    3. XM_006229775.3 → XP_006229837.1  tumor necrosis factor receptor superfamily member 19L isoform X1

      Related
      ENSRNOP00000101803.1, ENSRNOT00000144857.1
      Conserved Domains (2) summary
      cd13419
      Location:73 → 159
      TNFRSF19L; tumor necrosis factor receptor superfamily member 19-like (TNFRSF19L), also known as receptor expressed in lymphoid tissues (RELT)
      pfam12606
      Location:208 → 243
      RELT; Tumour necrosis factor receptor superfamily member 19
    4. XM_039082543.2 → XP_038938471.1  tumor necrosis factor receptor superfamily member 19L isoform X2

      UniProtKB/TrEMBL
      A6I6R8, F1LVW5
      Conserved Domains (2) summary
      cd13419
      Location:26 → 112
      TNFRSF19L; tumor necrosis factor receptor superfamily member 19-like (TNFRSF19L), also known as receptor expressed in lymphoid tissues (RELT)
      pfam12606
      Location:161 → 196
      RELT; tumor necrosis factor receptor superfamily member 19
    5. XM_006229780.4 → XP_006229842.1  tumor necrosis factor receptor superfamily member 19L isoform X3

      Conserved Domains (2) summary
      cd13419
      Location:73 → 159
      TNFRSF19L; tumor necrosis factor receptor superfamily member 19-like (TNFRSF19L), also known as receptor expressed in lymphoid tissues (RELT)
      pfam12606
      Location:208 → 243
      RELT; Tumour necrosis factor receptor superfamily member 19
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