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    Cmtm3 CKLF-like MARVEL transmembrane domain containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 291813, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cmtm3provided by RGD
    Official Full Name
    CKLF-like MARVEL transmembrane domain containing 3provided by RGD
    Primary source
    RGD:1308763
    See related
    EnsemblRapid:ENSRNOG00000010691 AllianceGenome:RGD:1308763
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cklfsf3
    Summary
    Predicted to act upstream of or within blastocyst hatching and positive regulation of B cell receptor signaling pathway. Predicted to be located in cytoplasmic vesicle; cytosol; and nuclear membrane. Predicted to be active in membrane. Orthologous to human CMTM3 (CKLF like MARVEL transmembrane domain containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 106.3), Lung (RPKM 96.6) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Cmtm3 in Genome Data Viewer
    Location:
    19p14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (629000..637152, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (622563..630721, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (830874..838528, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene dynein, cytoplasmic 1 light intermediate chain 2 Neighboring gene CKLF-like MARVEL transmembrane domain containing 4 Neighboring gene CKLF-like MARVEL transmembrane domain containing 2B Neighboring gene CKLF-like MARVEL transmembrane domain containing 1 Neighboring gene CKLF-like MARVEL transmembrane domain containing 2A

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm  
    located_in cytoplasmic vesicle  
    located_in cytosol  
    located_in nuclear membrane  

    General protein information

    Preferred Names
    CKLF-like MARVEL transmembrane domain-containing protein 3
    Names
    chemokine-like factor super family 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106164.1 → NP_001099634.1  CKLF-like MARVEL transmembrane domain-containing protein 3

      See identical proteins and their annotated locations for NP_001099634.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474006
      UniProtKB/TrEMBL
      A0A8I5ZUD6, A6JXW2, B5DFL6, F7F9A8
      Conserved Domains (1) summary
      pfam01284
      Location:36 → 149
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      629000..637152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039097537.2 → XP_038953465.1  CKLF-like MARVEL transmembrane domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZUD6, A6JXW2, B5DFL6, F7F9A8
      Conserved Domains (1) summary
      pfam01284
      Location:36 → 149
      MARVEL; Membrane-associating domain
    2. XM_006255049.5 → XP_006255111.1  CKLF-like MARVEL transmembrane domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006255111.1

      UniProtKB/TrEMBL
      A0A8I5ZUD6, A6JXW2, B5DFL6, F7F9A8
      Conserved Domains (1) summary
      pfam01284
      Location:36 → 149
      MARVEL; Membrane-associating domain
    3. XM_008772241.2 → XP_008770463.1  CKLF-like MARVEL transmembrane domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_008770463.1

      UniProtKB/TrEMBL
      A0A8I5ZUD6, A6JXW2, B5DFL6, F7F9A8
      Related
      ENSRNOP00000014234.6, ENSRNOT00000014234.9
      Conserved Domains (1) summary
      pfam01284
      Location:36 → 149
      MARVEL; Membrane-associating domain
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