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    C2h5orf22 similar to human chromosome 5 open reading frame 22 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310158, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C2h5orf22provided by RGD
    Official Full Name
    similar to human chromosome 5 open reading frame 22provided by RGD
    Primary source
    RGD:1306502
    See related
    EnsemblRapid:ENSRNOG00000022745 AllianceGenome:RGD:1306502
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306502
    Summary
    Orthologous to human C5orf22 (chromosome 5 open reading frame 22). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 82.1), Heart (RPKM 75.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C2h5orf22 in Genome Data Viewer
    Location:
    2q16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (63576348..63591764, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (61848790..61864762, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (62870871..62887048, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene PDZ domain containing 2 Neighboring gene ferritin light chain 1, pseudogene 14 Neighboring gene uncharacterized LOC100909396 Neighboring gene drosha ribonuclease III Neighboring gene uncharacterized LOC103695100 Neighboring gene cadherin 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    UPF0489 protein C5orf22 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107654.2 → NP_001101124.1  UPF0489 protein C5orf22 homolog

      See identical proteins and their annotated locations for NP_001101124.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6A6F1, A6KJN7, D3ZV99
      Conserved Domains (1) summary
      pfam12640
      Location:19 → 169
      UPF0489; UPF0489 domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      63576348..63591764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006232048.5 → XP_006232110.1  UPF0489 protein C5orf22 homolog isoform X1

      See identical proteins and their annotated locations for XP_006232110.1

      UniProtKB/TrEMBL
      A0A8I6A6F1
      Related
      ENSRNOP00000086868.1, ENSRNOT00000094063.2
      Conserved Domains (1) summary
      pfam12640
      Location:3 → 107
      UPF0489; UPF0489 domain

    2. XM_006232047.5 → XP_006232109.1  UPF0489 protein C5orf22 homolog isoform X1

      See identical proteins and their annotated locations for XP_006232109.1

      UniProtKB/TrEMBL
      A0A8I6A6F1
      Conserved Domains (1) summary
      pfam12640
      Location:3 → 107
      UPF0489; UPF0489 domain

    3. XM_039102204.2 → XP_038958132.1  UPF0489 protein C5orf22 homolog isoform X2

      Conserved Domains (1) summary
      pfam12640
      Location:19 → 179
      UPF0489; UPF0489 domain
    Nucleotide Protein Strain
    Heading Accession and Version

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