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    Slc27a3 solute carrier family 27 member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 295219, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slc27a3provided by RGD
    Official Full Name
    solute carrier family 27 member 3provided by RGD
    Primary source
    RGD:1310605
    See related
    EnsemblRapid:ENSRNOG00000015421 AllianceGenome:RGD:1310605
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable fatty-acyl-CoA synthase activity; long-chain fatty acid-CoA ligase activity; and very long-chain fatty acid-CoA ligase activity. Predicted to be involved in fatty acid transport and long-chain fatty acid metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane; mitochondrion; and plasma membrane. Orthologous to human SLC27A3 (solute carrier family 27 member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 308.7), Testes (RPKM 71.8) and 5 other tissues See more
    Orthologs
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    Genomic context

    See Slc27a3 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (178150835..178155503, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (175853241..175857909, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (189760747..189765415, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102551157 Neighboring gene DENN domain containing 4B Neighboring gene GATA zinc finger domain containing 2B Neighboring gene integrator complex subunit 3 Neighboring gene 40S ribosomal protein S23 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in endoplasmic reticulum  
    is_active_in endoplasmic reticulum membrane  
    is_active_in mitochondrion  
    located_in mitochondrion  
    is_active_in plasma membrane  

    General protein information

    Preferred Names
    long-chain fatty acid transport protein 3
    Names
    solute carrier family 27 (fatty acid transporter), member 3
    NP_001099909.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106439.1NP_001099909.1  long-chain fatty acid transport protein 3 precursor

      See identical proteins and their annotated locations for NP_001099909.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473976
      UniProtKB/TrEMBL
      A6J6L8, D3ZJA9
      Related
      ENSRNOP00000020815.4, ENSRNOT00000020815.7
      Conserved Domains (2) summary
      PRK08279
      Location:60666
      PRK08279; long-chain-acyl-CoA synthetase; Validated
      cl17068
      Location:91657
      AFD_class_I; Adenylate forming domain, Class I superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      178150835..178155503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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