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    2200002J24Rikl RIKEN cDNA 2200002J24 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 688924, updated on 9-Dec-2024

    Summary

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    Official Symbol
    2200002J24Riklprovided by RGD
    Official Full Name
    RIKEN cDNA 2200002J24 gene likeprovided by RGD
    Primary source
    RGD:1582983
    See related
    EnsemblRapid:ENSRNOG00000037485 AllianceGenome:RGD:1582983
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be active in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 35.6) See more
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    Genomic context

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    See 2200002J24Rikl in Genome Data Viewer
    Location:
    1q21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (95050776..95077311)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (85926638..85949890)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (89133158..89151954)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ETS variant transcription factor 2 Neighboring gene RNA binding motif protein 42 Neighboring gene HAUS augmin-like complex, subunit 5 Neighboring gene PMIS2 transmembrane protein Neighboring gene ATPase H+/K+ transporting subunit alpha Neighboring gene transmembrane protein 147

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC688924

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109519.1 → NP_001102989.1  uncharacterized protein LOC688924

      See identical proteins and their annotated locations for NP_001102989.1

      Status: PREDICTED

      Source sequence(s)
      CH473979
      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      95050776..95077311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274436.1 → XP_063130506.1  uncharacterized protein LOC688924 isoform X2

    2. XM_063274476.1 → XP_063130546.1  uncharacterized protein LOC688924 isoform X3

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81

    3. XM_039091283.2 → XP_038947211.1  uncharacterized protein LOC688924 isoform X3

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    4. XM_039091280.2 → XP_038947208.1  uncharacterized protein LOC688924 isoform X3

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    5. XM_017589738.3 → XP_017445227.1  uncharacterized protein LOC688924 isoform X3

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    6. XM_008759194.4 → XP_008757416.1  uncharacterized protein LOC688924 isoform X3

      See identical proteins and their annotated locations for XP_008757416.1

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Related
      ENSRNOP00000053585.2, ENSRNOT00000056742.5
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    7. XM_017589737.3 → XP_017445226.1  uncharacterized protein LOC688924 isoform X3

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    8. XM_008759193.4 → XP_008757415.1  uncharacterized protein LOC688924 isoform X3

      See identical proteins and their annotated locations for XP_008757415.1

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    9. XM_008759189.4 → XP_008757411.1  uncharacterized protein LOC688924 isoform X3

      See identical proteins and their annotated locations for XP_008757411.1

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    10. XM_039091272.2 → XP_038947200.1  uncharacterized protein LOC688924 isoform X3

      UniProtKB/TrEMBL
      A6JA09, D3ZQ81
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 95
      CD225; Interferon-induced transmembrane protein

    11. XM_039091219.2 → XP_038947147.1  uncharacterized protein LOC688924 isoform X1

      Conserved Domains (1) summary
      pfam04505
      Location:72 → 131
      CD225; Interferon-induced transmembrane protein
    Nucleotide Protein Strain
    Heading Accession and Version

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