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    Defb52 defensin beta 52 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498660, updated on 27-Nov-2024

    Summary

    Official Symbol
    Defb52provided by RGD
    Official Full Name
    defensin beta 52provided by RGD
    Primary source
    RGD:1565394
    See related
    EnsemblRapid:ENSRNOG00000038129 AllianceGenome:RGD:1565394
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Restricted expression toward (RPKM 107.8) See more
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    Genomic context

    See Defb52 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (77290591..77293067)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (70588150..70590626)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (75572014..75574546)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene defensin beta 51 Neighboring gene uncharacterized LOC134482413 Neighboring gene defensin beta 33 Neighboring gene uncharacterized LOC134482414

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037524.1NP_001032613.1  beta-defensin 52 precursor

      See identical proteins and their annotated locations for NP_001032613.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ012091
      UniProtKB/TrEMBL
      Q30KJ1
      Related
      ENSRNOP00000047337.4, ENSRNOT00000043486.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      77290591..77293067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)