Spata25 spermatogenesis associated 25 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Spata25provided by RGD
Official Full Name: spermatogenesis associated 25provided by RGD
Primary source: RGD:1564523
See related: EnsemblRapid:ENSRNOG00000015744 AllianceGenome:RGD:1564523
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: C20orf165
Summary: Predicted to be involved in spermatogenesis. Orthologous to human SPATA25 (spermatogenesis associated 25). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Testes (RPKM 99.5), Kidney (RPKM 69.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 3q42

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (173981863..173983818, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (153562479..153566508, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (161292170..161294125, complement)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH133588 (e-PCR)
- UniSTS:216871

UniSTS:487981 (e-PCR)
- UniSTS:487981

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in spermatogenesis	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: spermatogenesis-associated protein 25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.