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    PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 [ Homo sapiens (human) ]

    Gene ID: 100132832, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PMS2P9provided by HGNC
    Official Full Name
    PMS1 homolog 2, mismatch repair system component pseudogene 9provided by HGNC
    Primary source
    HGNC:HGNC:9135
    See related
    AllianceGenome:HGNC:9135
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PMSR5; PMS2L17; PMS2LP1
    Expression
    Ubiquitous expression in testis (RPKM 4.4), skin (RPKM 3.5) and 24 other tissues See more
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    Genomic context

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    See PMS2P9 in Genome Data Viewer
    Location:
    7q11.23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (77039480..77053038)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (78258078..78304085)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (76668797..76682355)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene Neighboring gene Sharpr-MPRA regulatory region 3059 Neighboring gene uroplakin 3B pseudogene 1 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 11 Neighboring gene speedy/RINGO cell cycle regulator family member E17 Neighboring gene speedy/RINGO cell cycle regulator family member E18 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:76693975-76694649 Neighboring gene SNF2 related chromatin remodeling ATPase 5 pseudogene Neighboring gene family with sequence similarity 185, member A pseudogene Neighboring gene ribosomal protein L7a pseudogene 43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Genomic organization of the human PMS2 gene family. Nicolaides NC, et al. Genomics, 1995 Nov 20. PMID 8586419
    2. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
    3. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • PMS2 postmeiotic segregation increased 2 pseudogene
    • postmeiotic segregation increased 2 pseudogene 9
    • postmeiotic segregation increased 2-like 17
    • postmeiotic segregation increased 2-like pseudogene 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028058.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC007000

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      77039480..77053038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      78258078..78304085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001129851.1: Suppressed sequence

      Description
      NM_001129851.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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